View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3257_low_2 (Length: 610)
Name: NF3257_low_2
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 253 - 593
Target Start/End: Original strand, 6487036 - 6487376
Alignment:
| Q |
253 |
ctaaatgaagactttgattgattggttgggctaaagaaatgggaaaggaagctgttaagttgagcgggagagaggaaagagagatagcatataaaaatgt |
352 |
Q |
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| T |
6487036 |
ctaaatgaagactttgattgattggttgggctaaagaaatgggaaaggaagctgttaagttgagcgggagagaggaaagagagagagcatataaaaatgt |
6487135 |
T |
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| Q |
353 |
ataaatataataaatatggtgtggaaatgaatagtaaacaaatcatgtatggacacgtagaacaaatccatttctttaagaggttcttacaaaattataa |
452 |
Q |
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| T |
6487136 |
ataaatataataaatatggtgtggaaatgaatagtaaacaaatcatgtatggacacgtaaaacaaatccatttctttaagaggttcttacaaaattataa |
6487235 |
T |
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| Q |
453 |
ttttgggtcctagatattcggttttccttggtaaaatataggattgcttcaattggtacaaaaattaattggctcttgttattacacttcgtgtggtctt |
552 |
Q |
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| T |
6487236 |
ttttgggtcctagatattcggttttccttggtaaaatataggattgcttcaattggtacaagaattaattggctcttgttattacacttcgtgtggtctt |
6487335 |
T |
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| Q |
553 |
aatttgttgcctttgagtgctattttaaggtataaattatt |
593 |
Q |
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| T |
6487336 |
aatttgttgcctttgagtgctattttaaggtataaattatt |
6487376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 6486867 - 6486954
Alignment:
| Q |
87 |
caaacatgatgtcctcttttctctcttatctcactatcattcaaga----tgtttgtttgtttgttactctttcaccgattcagacac |
170 |
Q |
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| T |
6486867 |
caaacatgatgtcctcttttctctcttatctcactatcattcaagatgtttgtttgtttgtttgttactctttcaccgattcagacac |
6486954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6486781 - 6486830
Alignment:
| Q |
1 |
tcggggttcggattgcataaactgtggacgaggaatgttattattgttgt |
50 |
Q |
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| T |
6486781 |
tcggggttcggattgcataaactgtggacgaggaatgttattgttgttgt |
6486830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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