View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3257_low_22 (Length: 236)
Name: NF3257_low_22
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_low_22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 50417118 - 50417337
Alignment:
| Q |
18 |
aactcgaagtagaaatccagggtcttctactaccttatgttaagacagtgatccggtcggtgt-gattcaacaaaaataagataaaattgatataagttg |
116 |
Q |
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| T |
50417118 |
aactcgaagtagaaatccagggtcttctactaccttatgttaagacagtgatctggtcggtgttgattcaacaaaaataagataaaattgatataagctg |
50417217 |
T |
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| Q |
117 |
agttttgagacactaatttcccttgttttcggtagagccaactccgattaggtgatttggtcatcgtttcagtcgtaaggacaggttatactatgagttt |
216 |
Q |
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| T |
50417218 |
agttttgagacactaatttcccttgttttcggtagagccaactccgattaggtgatttggtcatcgtttcagttgtaaggacaggttatactatgagttt |
50417317 |
T |
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| Q |
217 |
ctactttaagaaagcgacgc |
236 |
Q |
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|||||||||||||||||||| |
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| T |
50417318 |
ctactttaagaaagcgacgc |
50417337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 26845375 - 26845428
Alignment:
| Q |
80 |
tgattcaacaaaaataagataaaattgatataagttgagttttgagacactaat |
133 |
Q |
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| T |
26845375 |
tgattcaacaaaaataagagaaatcatatataagttgagttttgagatactaat |
26845428 |
T |
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