View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3257_low_5 (Length: 482)
Name: NF3257_low_5
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_low_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 4 - 482
Target Start/End: Original strand, 31641674 - 31642152
Alignment:
| Q |
4 |
gaggaggagcagagaggttggtgtgaaaatttggagattcaggcttgatgttgtggtggagagtattattaaggttgctagggttagggttttgttgagg |
103 |
Q |
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| T |
31641674 |
gaggaggagaagagaggttggtgtgaaaatttggagattcaggcttgatgttgtggtggagagtattattaaggttgctagggttagggttttgttgagg |
31641773 |
T |
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| Q |
104 |
tgggtcccaggtgatgtggctttgtgggttttggaaactttgttgttgatttgggaagaggaaaagagattggactaatgggtttgtgtttgtggtggtg |
203 |
Q |
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| T |
31641774 |
tgggtcccaggtgatgtggctttgtgggttttggaaactttgttgttgatttgggaagaggaaaagagattggactaatgggtttgtgtttgtggtggtg |
31641873 |
T |
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| Q |
204 |
atggctaattggtttgcagacattcttgcactttcttcagccaatgcatcacaaaatgctctatgagttatgaagctatccttcctgcagttttcacaca |
303 |
Q |
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| T |
31641874 |
atggctaattggtttgcagacattcttgcactttcttcagccaatgcatcacaaaatgctctatgagttatgaagctatccttcctgcagttttcacaca |
31641973 |
T |
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| Q |
304 |
aattaaaacaaaagaaaatttatattaattcacaaaagagcatcagaaaatactatatattttcttgcatataatacttataaccattgtattattcatt |
403 |
Q |
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| T |
31641974 |
aattaaaacaaaagaaaatttatattaattcacaaaagagcatgagaaaatactatatattttcttgcatataatacttataaccattgtattattcatt |
31642073 |
T |
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| Q |
404 |
tataaaaaagggccactaatatggtcttgattcaatagtggacttcatgaaccaacatgtcatttgtgtttttattgag |
482 |
Q |
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| T |
31642074 |
tataaaaaagggccactaatatggtcttgattcaatagtggacttcatgaaccaacatgtcatttgtgtttttattgag |
31642152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 28495819 - 28495878
Alignment:
| Q |
227 |
tcttgcactttcttcagccaatgcatcacaaaatgctctatgagttatgaagctatcctt |
286 |
Q |
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| T |
28495819 |
tcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctt |
28495878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 22084946 - 22085007
Alignment:
| Q |
229 |
ttgcactttcttcagccaatgcatcacaaaatgctctatgagttatgaagctatccttcctg |
290 |
Q |
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| T |
22084946 |
ttgcactttgttcagttaatgcatcacaaaaagctctatgtgttatgaagctgtccttcctg |
22085007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 5787997 - 5788047
Alignment:
| Q |
227 |
tcttgcactttcttcagccaatgcatcacaaaatgctctatgagttatgaa |
277 |
Q |
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| T |
5787997 |
tcttgcactctcttctgctaatgcatcacaaaatgctctatgtgttatgaa |
5788047 |
T |
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