View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3257_low_6 (Length: 437)

Name: NF3257_low_6
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3257_low_6
NF3257_low_6
[»] chr8 (3 HSPs)
chr8 (85-276)||(31694994-31695184)
chr8 (276-422)||(31694826-31694970)
chr8 (172-225)||(31694167-31694220)
[»] chr4 (2 HSPs)
chr4 (211-422)||(45534707-45534939)
chr4 (172-216)||(45534033-45534077)
[»] chr5 (1 HSPs)
chr5 (172-259)||(30002869-30002957)
[»] chr7 (1 HSPs)
chr7 (172-227)||(34853322-34853377)
[»] chr2 (1 HSPs)
chr2 (197-233)||(4058998-4059034)
[»] chr1 (1 HSPs)
chr1 (197-233)||(41884211-41884247)


Alignment Details
Target: chr8 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 85 - 276
Target Start/End: Complemental strand, 31695184 - 31694994
Alignment:
Q  85 aggggaagtaattgaatattgttcaaaacaatttacgagtaatttaatgtcattctatttcattttagtaggataaataaagggtaacatttatggtggg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||  |||||||||||||    
T  31695184 aggggaagtaattgaatattgttcaaaacaatttacgagtaatttaatgtcattct-tttcattttagtaggacaaacaaagggtggcatttatggtggg 31695086  T
Q  185 tagagggaagattttcccaccataggaaagttgattttaactgttagattagaaaggaatattgattttattatgatctgcttacattatat 276  Q
    ||||||||||||||||||| |||||| || ||||||||||||||||||||| | ||||||||||||||||||||| | ||| ||||||||||    
T  31695085 tagagggaagattttcccatcatagggaaattgattttaactgttagattaaagaggaatattgattttattatggtatgcctacattatat 31694994  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 276 - 422
Target Start/End: Complemental strand, 31694970 - 31694826
Alignment:
Q  276 tgtatcatggcctaccaccgtctcttcctctctcg--atagctccctctgatccccaaattaaatcccaaacatccacacctcattttctcaatttatgg 373  Q
    ||||||||||||||||||||||||||||||||||   |||||||    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31694970 tgtatcatggcctaccaccgtctcttcctctctctccatagctc----tgatcgccaaattaaatcccaaacatccacacctcattttctcaatttatgg 31694875  T
Q  374 tcgtgtttcaattccacacctccccactaagagtttgagcattaaaatt 422  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31694874 tcgtgtttcaattccacacctccccactaagagtttgagtattaaaatt 31694826  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 31694167 - 31694220
Alignment:
Q  172 catttatggtgggtagagggaagattttcccaccataggaaagttgattttaac 225  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| | ||||||    
T  31694167 catttagggtgggtagggggaagattttcccaccataggaaagttaaatttaac 31694220  T

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Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 211 - 422
Target Start/End: Complemental strand, 45534939 - 45534707
Alignment:
Q  211 aaagttgattttaactgttagattagaaaggaatattgattttattatgatctgcttacattatat---------------------gtatcatggccta 289  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||                     ||||||||||||     
T  45534939 aaagttgattttaactgttagattagagaggaacattgattttattatggtctgcctacattatatttttttcctttctctttcagtgtatcatggcctg 45534840  T
Q  290 ccaccgtctcttcctctctcgatagctccctctgatccccaaattaaatcccaaacatccacacctcattttctcaatttatggtcgtgtttcaattcca 389  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||    
T  45534839 ccaccgtctcttcctctccccatagctccctctgatccccaaattaaatcacaaacatccacacctcattttctcaatttattgttgtgtttcaattcca 45534740  T
Q  390 cacctccccactaagagtttgagcattaaaatt 422  Q
    |||||||||||||||||||||||||||||||||    
T  45534739 cacctccccactaagagtttgagcattaaaatt 45534707  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 45534033 - 45534077
Alignment:
Q  172 catttatggtgggtagagggaagattttcccaccataggaaagtt 216  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||    
T  45534033 catttagggtgggtagggggaagattttcccaccataagaaagtt 45534077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 30002869 - 30002957
Alignment:
Q  172 catttatggtgggtagagggaagattttcccaccataggaaagttga-ttttaactgttagattagaaaggaatattgattttattatg 259  Q
    |||||| |||||| || || |||||||||||||||||||  ||||||  ||| || |||| |||| ||||||||| |||||||||||||    
T  30002869 catttagggtgggaaggggaaagattttcccaccataggtcagttgacattttaccgttaaattaaaaaggaatactgattttattatg 30002957  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 34853377 - 34853322
Alignment:
Q  172 catttatggtgggtagagggaagattttcccaccataggaaagttgattttaactg 227  Q
    |||||| |||||||||  |||||| ||||||||||||||||||||| |||| ||||    
T  34853377 catttagggtgggtaggaggaagactttcccaccataggaaagttgctttttactg 34853322  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 4059034 - 4058998
Alignment:
Q  197 tttcccaccataggaaagttgattttaactgttagat 233  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  4059034 tttcccaccataggaaagttgattttgactattagat 4058998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 41884247 - 41884211
Alignment:
Q  197 tttcccaccataggaaagttgattttaactgttagat 233  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  41884247 tttcccaccataggaaagttgattctaactattagat 41884211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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