View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3257_low_7 (Length: 416)
Name: NF3257_low_7
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 43588873 - 43588540
Alignment:
| Q |
20 |
accaccactacccaccatggctagtatctcaattttccgacgacctttatccgatgacatcgttctgtccctttcaactggagatcaatttggtattatt |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43588873 |
accaccactacccaccatggccagtatctcaatttcccgacgacctttatccgatgacatcgttctgtccctttcaactggagatcaatttggtattctt |
43588774 |
T |
|
| Q |
120 |
gcatatggtcttcaagctatgacatattaaaccgtggaggtggccgtacgaagaatcactgtgaaattgagcacaaattttgaacacgaggaatcactgt |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43588773 |
gcatatggtcttcaagctatgacagatttaaccgtggagatggtcgtacgaagaatcactgtgaaattgagcacaaattttgaacacgaggaatcactgt |
43588674 |
T |
|
| Q |
220 |
aaagtgacccatcaacacccatcagaacttgaattttgtagtagtgaaattgaggacgaggaacgtttcta-----------ccagagtagtttcttcag |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
43588673 |
aaagtgacccatcaacacccatcagaacttgaattttatagtagtgaaattgaggacgaggaacgtttctaccagcataataccagagtagttccttcag |
43588574 |
T |
|
| Q |
309 |
actttggaacgtttctactagtaatactatagta |
342 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
43588573 |
actttggaacgtttctactagtaataccatagta |
43588540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University