View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3257_low_9 (Length: 380)
Name: NF3257_low_9
Description: NF3257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3257_low_9 |
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| [»] scaffold0146 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 37701259 - 37701623
Alignment:
| Q |
1 |
aatggacaaatgcaaaatgaatttcaaaagataactgacggattaaagcaagaacttgaagtgacgcataaggaagtcgctgaattaaattagaagttga |
100 |
Q |
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| T |
37701259 |
aatggacaaatgcaaaatgaatttcaaaagataactgacggattaaagcaagaacttgaagtgacgcataaggaagtcgctgaattaaattagaagttga |
37701358 |
T |
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| Q |
101 |
cgattacacatgaagagaaggaggacataaaatcaaaacaccttgcagccctgagcaagatacaatcagcatacaagattgacatggatatgaaaactga |
200 |
Q |
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| T |
37701359 |
cgattacacatgaagagaaggaggacataaaatcaaaacaccttgcagccctgagcaagatacaatcagcatacaagattgacatggatatgaaaactga |
37701458 |
T |
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| Q |
201 |
tgctgagaatactgaacttaataagcaactggacattgccggtaaagtagaagctgaactgagtcaaaatttggaggatatgaagacaaaaaacaaaagc |
300 |
Q |
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| T |
37701459 |
tgctgagaatactgaacttaataagcaactgaacattgccggtaaagtagaagctgaactgagtcaaaatttggaggatatgaagacaaaaaacaaaagc |
37701558 |
T |
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| Q |
301 |
ttggccatgaagaaagagacagctcgtcaacagattgatgaggnnnnnnngattacagatgaact |
365 |
Q |
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| T |
37701559 |
ttggccatgaagaaagagacagctcgtcaacagattgatgaggaaaaaaagattacagatgaact |
37701623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 41796035 - 41796224
Alignment:
| Q |
14 |
aaaatgaatttcaaaagataactgacggattaaagcaagaacttgaagtgacgcataaggaagtcgctgaattaaattagaagttgacgattacacatga |
113 |
Q |
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| T |
41796035 |
aaaatgagtttcaaaagataattgatggattaaagcaagaacttgaagtggcacataaggaagccgctgacttaaatcagaagttgacaattacacatga |
41796134 |
T |
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| Q |
114 |
agagaaggaggacataaaatcaaaacaccttgcagccctgagcaagatacaatcagcatacaagattgacatggatatgaaaactgatgc |
203 |
Q |
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| T |
41796135 |
agagaaggatgacataaattcaaaacaccttgcagcactgagcaagatacaagaagcagacaaggttagtatggatttgaaaactgatgc |
41796224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 202 - 343
Target Start/End: Original strand, 41796259 - 41796400
Alignment:
| Q |
202 |
gctgagaatactgaacttaataagcaactggacattgccggtaaagtagaagctgaactgagtcaaaatttggaggatatgaagacaaaaaacaaaagct |
301 |
Q |
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| T |
41796259 |
gctgagaatactgaactaaataagcaactggacattgctggtaaagtagaagctgaactgagtcaaaaattggaggatatgaagacagaaaacaatagct |
41796358 |
T |
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| Q |
302 |
tggccatgaagaaagagacagctcgtcaacagattgatgagg |
343 |
Q |
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| T |
41796359 |
tggccgtggagaaagagacagctcttcaccagattgacgagg |
41796400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 32472743 - 32472676
Alignment:
| Q |
276 |
ggatatgaagacaaaaaacaaaagcttggccatgaagaaagagacagctcgtcaacagattgatgagg |
343 |
Q |
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| T |
32472743 |
ggatatgaaggaaaaaaagaaaagcttggccatggagaaagaggcaattcttcaacagattgatgagg |
32472676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 36758799 - 36758732
Alignment:
| Q |
276 |
ggatatgaagacaaaaaacaaaagcttggccatgaagaaagagacagctcgtcaacagattgatgagg |
343 |
Q |
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| T |
36758799 |
ggatataaagaaaaaaaacaaaagcttggccatggagaaagaggcaattcttcaagagattgatgagg |
36758732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 341
Target Start/End: Complemental strand, 24798 - 24732
Alignment:
| Q |
276 |
ggatatgaagacaaaaaa-caaaagcttggccatgaagaaagagacagctcgtcaacagattgatga |
341 |
Q |
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| T |
24798 |
ggatatgaagaaaaaaaaacaaaagcttggccatggagaaagaggcaattcttcaatagattgatga |
24732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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