View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3258_high_3 (Length: 238)
Name: NF3258_high_3
Description: NF3258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3258_high_3 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 37189160 - 37188940
Alignment:
| Q |
18 |
acttgagcctctcatgacttgtagaatccaactcctcagagaaccaagcattcttattggattgtgttgaactacaagatgatgttccagaagacagagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37189160 |
acttgagcctctcatgacttgtagaatccaactcctcagagaaccaagaattcttattggattgtgttgaactacaagatgatgttccagaagacacagt |
37189061 |
T |
|
| Q |
118 |
acatgcattagcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37189060 |
acatgcattagcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtagcccaatcatcagcattc |
37188961 |
T |
|
| Q |
218 |
caaagactagaatagattctc |
238 |
Q |
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||||||||||||||||||||| |
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| T |
37188960 |
caaagactagaatagattctc |
37188940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 53493234 - 53493027
Alignment:
| Q |
18 |
acttgagcctctcatgacttgtagaatccaactcctcagagaaccaagcattcttattggattgtgttgaactacaagatgatgttccagaagacagagt |
117 |
Q |
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||||||||||||||| |||||| ||||||| |||||||||||||||| |||||||||| ||||||| |||| |||||||||| |||||||||||| | | |
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| T |
53493234 |
acttgagcctctcataacttgttgaatccagctcctcagagaaccaatcattcttattagattgtgctgaatcacaagatgatattccagaagacacaat |
53493135 |
T |
|
| Q |
118 |
acatgcattagcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattc |
217 |
Q |
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||||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
53493134 |
gcatgcattagcattgaagtgtctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattc |
53493035 |
T |
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| Q |
218 |
caaagact |
225 |
Q |
| |
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|| ||||| |
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| T |
53493034 |
cagagact |
53493027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 53499416 - 53499319
Alignment:
| Q |
128 |
gcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagact |
225 |
Q |
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|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
53499416 |
gcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagact |
53499319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 53495510 - 53495407
Alignment:
| Q |
128 |
gcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactag |
227 |
Q |
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|||||||| || ||||| || ||||| || |||||||| | |||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||| | |
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| T |
53495510 |
gcattgaaattcctatatgatgcagtgaatggagcatttgtccaatctgtcttgacaagaccacctcttgttgcccaatcatcagcattccatagacttg |
53495411 |
T |
|
| Q |
228 |
aata |
231 |
Q |
| |
|
|||| |
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| T |
53495410 |
aata |
53495407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 53488634 - 53488734
Alignment:
| Q |
131 |
ttgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactagaat |
230 |
Q |
| |
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|||||||| ||| ||||||||||||| ||||| | ||||||||| || ||||| ||||||||||| ||||||||||| |||||||| ||||| |||| |
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| T |
53488634 |
ttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcggcattccatagacttgaat |
53488733 |
T |
|
| Q |
231 |
a |
231 |
Q |
| |
|
| |
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|
| T |
53488734 |
a |
53488734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 53502539 - 53502428
Alignment:
| Q |
127 |
agcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagacta |
226 |
Q |
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|||||| || ||||| || ||||| || || ||||| || | |||||||||||| || |||||||||||||| ||||| | ||| |||||||| | ||| |
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| T |
53502539 |
agcattaaaatttctgtaggaagctgtgaatggagcctttgtccaatctgtcttgactagtccacctcttgttgcccagttatctgcattccacaaactt |
53502440 |
T |
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| Q |
227 |
gaatagattctc |
238 |
Q |
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||||| |||||| |
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| T |
53502439 |
gaatatattctc |
53502428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 16942783 - 16942680
Alignment:
| Q |
128 |
gcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactag |
227 |
Q |
| |
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||||||||||||||||| || ||| | || |||||||||| ||||||||| || |||| |||||||| |||||||||| ||| |||||||||||||| | |
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| T |
16942783 |
gcattgaagtttctatatgaggcaatgaatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttg |
16942684 |
T |
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| Q |
228 |
aata |
231 |
Q |
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|||| |
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| T |
16942683 |
aata |
16942680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 17013448 - 17013345
Alignment:
| Q |
128 |
gcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactag |
227 |
Q |
| |
|
||||||||||||||||| || ||| | || |||||||||| ||||||||| || |||| |||||||| |||||||||| ||| |||||||||||||| | |
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|
| T |
17013448 |
gcattgaagtttctatatgaggcaatgaatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttg |
17013349 |
T |
|
| Q |
228 |
aata |
231 |
Q |
| |
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|||| |
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|
| T |
17013348 |
aata |
17013345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 35018139 - 35018065
Alignment:
| Q |
164 |
ttggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactagaatagattctc |
238 |
Q |
| |
|
||||||||||| || || || | ||||||||||||||||||||||||||||||||| || || |||||||||||| |
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| T |
35018139 |
ttggaccaatcagttttcaccaatccacctcttgtggcccaatcatcagcattccacaggctggaatagattctc |
35018065 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 42991468 - 42991377
Alignment:
| Q |
147 |
aagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactagaatagattctc |
238 |
Q |
| |
|
|||| ||||| || || ||||||||||| || || || | ||||||||||| |||||||| ||||| ||||||||||| ||||| |||||| |
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|
| T |
42991468 |
aagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcttcagcgttccaaagacttgaatatattctc |
42991377 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 33811103 - 33811139
Alignment:
| Q |
183 |
caagtccacctcttgtggcccaatcatcagcattcca |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |
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| T |
33811103 |
caagtccacctcttgtagcccaatcatctgcattcca |
33811139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 38214037 - 38214128
Alignment:
| Q |
147 |
aagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactagaatagattctc |
238 |
Q |
| |
|
|||| ||||| || || ||||||||||| || || || | ||||||||||| |||||||||||||||||||| ||||| |||||||||||| |
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| T |
38214037 |
aagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctc |
38214128 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 38218256 - 38218347
Alignment:
| Q |
147 |
aagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattccaaagactagaatagattctc |
238 |
Q |
| |
|
|||| ||||| || || ||||||||||| || || || | ||||||||||| |||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
38218256 |
aagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctc |
38218347 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 33450508 - 33450458
Alignment:
| Q |
169 |
ccaatctgtcttaacaagtccacctcttgtggcccaatcatcagcattcca |
219 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
33450508 |
ccaatttgttttaacaagtccacctcttgtggcccaattatctgcattcca |
33450458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 47495974 - 47495938
Alignment:
| Q |
183 |
caagtccacctcttgtggcccaatcatcagcattcca |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
47495974 |
caagtccacctcttgtagcccaatcatctgcattcca |
47495938 |
T |
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