View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3258_low_2 (Length: 449)
Name: NF3258_low_2
Description: NF3258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3258_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 30961710 - 30961283
Alignment:
| Q |
1 |
taagaggattagtgaagagtaaaggaataattacttttgttgaagagagggtaatgtgaaggcatcaacctctaatcaaaaggactatgagaaggaagag |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30961710 |
taagaggattagtgaagattaaaggaataattacttttgttgaagagagggtaatgtgaaggcatcaacctctaatcaaaaggactatgagaaggaagag |
30961611 |
T |
|
| Q |
101 |
gatgaggctcctagggagtataggagtagtaggaggaatggaggaagacttagaaattatataatcaagaaaggatagggaagaaaaataactttggaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30961610 |
gatgaggctcctagggagtataggagtagtaggaggaatggaggaagacttagaaattatataatcaagaaaggatagggaggaaaaataactttggaag |
30961511 |
T |
|
| Q |
201 |
aaaaagaaacttgaaattcctaatttttaagggaaggttgatctagaaacatgcttacattgagagcaataagtggaacaaaatttagttaccacgaagt |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30961510 |
aaaaagaaacttgaaattcctaatttttaaaggaaggttgatctagaaacatgcttacattgagagcaataagtggaacaaaatttagttaccacgaagt |
30961411 |
T |
|
| Q |
301 |
taggggaggaaaggaaagtgaagttagcaacttttgagttcacaaattatgccatattacagtgggatcaactacaaaaagagaggggatcacatcttgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30961410 |
taggggaggaaaggaaagtgaagttagcaacttttgagttcacaaattatgccatattacagtgggatcaactacaaaaagagaggggatcacatcttgc |
30961311 |
T |
|
| Q |
401 |
tgttaatcttatcatgaatgataccccg |
428 |
Q |
| |
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| T |
30961310 |
tgttaatcttatcatgaatgataccccg |
30961283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 138 - 347
Target Start/End: Original strand, 38784324 - 38784538
Alignment:
| Q |
138 |
atggaggaagacttagaaattatataatcaagaaagga----tagggaagaaaaataactttggaagaaaaagaaacttgaaattcctaatttttaaggg |
233 |
Q |
| |
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||||||||||||||||||| || ||||||| |||||| ||| || ||| |||||||||||||||| |||||| || |||||||||| |||||||| |
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| T |
38784324 |
atggaggaagacttagaaac-atgtaatcaacaaaggaggattagagaggaagaataactttggaagaacaagaaatttaaaattcctaaattttaagga |
38784422 |
T |
|
| Q |
234 |
aaggttgatct--agaaacatgcttacattgagagcaataagtggaacaaa-atttagttaccacgaagttaggggaggaaaggaaagtgaagttagcaa |
330 |
Q |
| |
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||||||||||| |||||||| |||| ||| ||||| | || ||||||||| |||||||||||| ||| ||| |||||||| |||||||||||||||||| |
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| T |
38784423 |
aaggttgatctagagaaacatacttatattcagagctaaaattggaacaaatatttagttaccatgaattta-gggaggaatggaaagtgaagttagcaa |
38784521 |
T |
|
| Q |
331 |
cttttgagttcacaaat |
347 |
Q |
| |
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|||| ||||||||||| |
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| T |
38784522 |
ctttgaagttcacaaat |
38784538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 347
Target Start/End: Complemental strand, 38742132 - 38741988
Alignment:
| Q |
205 |
agaaacttgaaattcctaatttttaagggaaggttgatct--agaaacatgcttacattgagagcaataagtggaacaaa-atttagttaccacgaagtt |
301 |
Q |
| |
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||||||||||||||| ||||||||||||||| |||||| | |||||||| |||| ||| ||||| | |||||||||||| |||||||||||| |||||| |
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|
| T |
38742132 |
agaaacttgaaattcttaatttttaagggaatgttgatttagagaaacatacttaaattcagagctaaaagtggaacaaatatttagttaccatgaagtt |
38742033 |
T |
|
| Q |
302 |
aggggaggaaaggaaagtgaagttagcaacttttgagttcacaaat |
347 |
Q |
| |
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| |||| ||| |||||||||||||||||||||| ||||||||||| |
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| T |
38742032 |
a-gggaagaatggaaagtgaagttagcaactttgaagttcacaaat |
38741988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 38790437 - 38790667
Alignment:
| Q |
29 |
aattacttttgttgaagagagggtaatgtgaaggcatcaacctctaa-tcaaaaggactat--gagaaggaagaggatgaggctcctagggagtatagga |
125 |
Q |
| |
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||||||||| ||| |||| |||||||||||||| |||||||||| || ||||||||||||| ||| ||||||| |||||| |||| ||||||||| || |
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| T |
38790437 |
aattactttggttaaagaaagggtaatgtgaagtcatcaacctccaagtcaaaaggactatatgaggaggaagatgatgagactccaagggagtat--ga |
38790534 |
T |
|
| Q |
126 |
gtagtaggaggaatggaggaagacttagaaattatataatcaagaaaggat-------------agggaagaaaaataactttggaagaaaaagaaactt |
212 |
Q |
| |
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| T |
38790535 |
ggcataggagacattgagaaagacttaaaaac-atgtaatcaagaaaggatgattagggtctctagggaggaagaataactttggaagaaaaagaaactt |
38790633 |
T |
|
| Q |
213 |
gaaattcctaatttttaagggaaggttgatctaga |
247 |
Q |
| |
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|||||||| | |||||||||||||||||| |||| |
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| T |
38790634 |
-aaattccttacttttaagggaaggttgatataga |
38790667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 34081577 - 34081629
Alignment:
| Q |
190 |
aactttggaagaaaaagaaacttgaaattcctaatttttaagggaaggttgat |
242 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| || ||||||||||| |
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| T |
34081577 |
aactttggaagaaaaagaaacttaaaattcctaatttccaaaggaaggttgat |
34081629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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