View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3258_low_4 (Length: 230)
Name: NF3258_low_4
Description: NF3258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3258_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37188670 - 37188894
Alignment:
| Q |
1 |
caattctacctatggtttgacccaactgcagattttcacacttattccatcctctggaacccacaacgaattgtgtaagtattaacttaattccttaaaa |
100 |
Q |
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| T |
37188670 |
caattctacctatggtttgacccaactgcagattttcacacttattccatcctctggaacccacaacgaattgtgtaagtactaaactaattccttaaaa |
37188769 |
T |
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| Q |
101 |
taattaaataaacaaaaattgnnnnnnnnnnnnnngcaattacttgtgttggaagtaactaaataagtctaataaattgtgtttattttttcagtttctc |
200 |
Q |
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| T |
37188770 |
taattaaataaacaaaaattg-----tttttttttgcaattacttgtgttggaagtaactaaataagtctaataaattctgtttattttttcagtttctc |
37188864 |
T |
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| Q |
201 |
tgtggatggaactccaattagggaattcaa |
230 |
Q |
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| T |
37188865 |
tgtggatggaagtccaattagggaattcaa |
37188894 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 53492736 - 53492809
Alignment:
| Q |
7 |
tacctatggtttgacccaactgcagattttcacacttattccatcctctggaacccacaacgaattgtgtaagt |
80 |
Q |
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| T |
53492736 |
tacctttggtttgacccaactgcagattttcacacatactcaattctatggaatccacaacgtattgtgtaagt |
53492809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 53492875 - 53492968
Alignment:
| Q |
139 |
attacttgtgttggaagtaactaaataagtctaataaat-tgtgtttattt-tttcagtttctctgtggatggaactccaattagggaattcaa |
230 |
Q |
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| T |
53492875 |
attacttgtgttggaagaaactaaattagactattctctctgtgtatatttatttcagtttctctgtggatggaactccaattagagaattcaa |
53492968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 53499035 - 53499115
Alignment:
| Q |
1 |
caattctacctatggtttgacccaactgcagattttcacacttattccatcctctggaacccacaacgaattgtgtaagta |
81 |
Q |
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| T |
53499035 |
caattttacctttggtttgacccaactgcagattttcacacatactcaattctatggaatcctcaacgtattgtgtaagta |
53499115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 53499217 - 53499260
Alignment:
| Q |
187 |
tttttcagtttctctgtggatggaactccaattagggaattcaa |
230 |
Q |
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| T |
53499217 |
tttttcagtttctctgtagatggaactccaattagggaattcaa |
53499260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 53495077 - 53495155
Alignment:
| Q |
1 |
caattctacctatggtttgacccaactgcagattttcacacttattccatcctctggaacccacaacgaattgtgtaag |
79 |
Q |
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| T |
53495077 |
caattccatctatggtttgatccaactgctgattttcacacatactccattctttggaatcctcaacgcattgtgtaag |
53495155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 53502173 - 53502234
Alignment:
| Q |
1 |
caattctacctatggtttgacccaactgcagattttcacacttattccatcctctggaaccc |
62 |
Q |
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| T |
53502173 |
caattctatctatggtttgacccagcagctgattttcacacttattctatcatatggaaccc |
53502234 |
T |
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