View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3259_high_16 (Length: 249)
Name: NF3259_high_16
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3259_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 40505409 - 40505172
Alignment:
| Q |
1 |
tattctcttttcatacattatgctaataattagtgtttgtttacatagaccgttagatcgataaaatcacggtggttcaccactccaatgtgcaactttt |
100 |
Q |
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| T |
40505409 |
tattctcttttcatacattatgctaataattagtgtttgtttacatagaccattagatcgataaaatcacggtagttcaccactccaatgtgcaactttt |
40505310 |
T |
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| Q |
101 |
gctaaaattacgttgactcgccatggttctgccaatctcaccgtcaatccaaacatgtactcggtggttctcaacttgctataaaacggccttggtgatt |
200 |
Q |
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| T |
40505309 |
gctaaaattacgttgactcaccatggttctgtcaatctcaccgtcaatccaaacatgtacttggtggttctcaacttgctataaaaaggccttggtgatt |
40505210 |
T |
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| Q |
201 |
gctatcatgtaacttgttgaaggttaatcaattttctt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
40505209 |
gctatcatgtaacttgttgaaggttaatcaattttctt |
40505172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 22137900 - 22137854
Alignment:
| Q |
1 |
tattctcttttcatacattatgctaataattagtgtttgtttacatag |
48 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22137900 |
tattctcttttcatacat-atgctaataattagtgtttgtttacatag |
22137854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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