View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3259_high_17 (Length: 246)
Name: NF3259_high_17
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3259_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 35016342 - 35016112
Alignment:
| Q |
1 |
cgcagtaaaaaacggcgtagtagcaccgatggcttgattaaacgacacaggaagataccgtaacgaaacattaccaaaaacgacggaaacacagaaaata |
100 |
Q |
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| T |
35016342 |
cgcagtaaaaaacggcgtagtagcaccgatagcttgattaaacgacacaggaagataccgtaacgaaacattaccaaaaacgacggaaacacagaaaata |
35016243 |
T |
|
| Q |
101 |
aaactcaaagtagcgatcttaaagaattgaagacgagaacgcatgaattgcattggaaccattttgaaccacgcgattgcaacgtagctgaataaggaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35016242 |
aaactcaaagtagcgatcttaaagaattgaagacgagaacgcatgaattgcattggaaccattttgaaccacgcgattgcaacgtagctgaataaggaac |
35016143 |
T |
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| Q |
201 |
atgctgtcatgtgacacatggtgaggaaaat |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35016142 |
atgctgtcatgtgacacatggtgaggaaaat |
35016112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 31330537 - 31330308
Alignment:
| Q |
2 |
gcagtaaaaaacggcgtagtagcaccgatggcttgattaaacgacacaggaagataccgtaacgaaacattaccaaaaacgacggaaacacagaaaataa |
101 |
Q |
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| T |
31330537 |
gcagtaaagaaaggcgtagtcgcgccaatagcctgattaaacgacacaggaagatatcgaagcgaaatattcccaaacacaacagaaacacagaaaatca |
31330438 |
T |
|
| Q |
102 |
aactcaaagtagcgatcttaaagaattgaagacgagaacgcatgaattgcattggaaccattttgaaccacgcgattgcaacgtagctgaataaggaaca |
201 |
Q |
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| T |
31330437 |
aactcaaagcagagatcttaaagaattgaaccctggatcgaatagtttgcataggaacaatcttcatccatgctatagcaacatagctaaacaaagaaca |
31330338 |
T |
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| Q |
202 |
tgctgtcatgtgacacatggtgaggaaaat |
231 |
Q |
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|||||||| |||||||||||||| ||||| |
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| T |
31330337 |
cgctgtcatatgacacatggtgagaaaaat |
31330308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 24750471 - 24750419
Alignment:
| Q |
5 |
gtaaaaaacggcgtagtagcaccgatggcttgattaaacgacacaggaagata |
57 |
Q |
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||||||||||| || |||||||| || ||||||||||| |||||||||||||| |
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| T |
24750471 |
gtaaaaaacggtgtcgtagcaccaatagcttgattaaaagacacaggaagata |
24750419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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