View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3259_high_19 (Length: 236)
Name: NF3259_high_19
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3259_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40505389 - 40505612
Alignment:
| Q |
1 |
ataatgtatgaaaagagaataaca-gtccgaggacagaaattgtttcaaggactcaagtggaagaagcaatagaacaggaatagaaacaggagaagccat |
99 |
Q |
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| T |
40505389 |
ataatgtatgaaaagagaataacaagtccgaggacagaaattgtgtcaaggactcaagtggaagaagcaatagaacaggaatagaaacaggagaagccat |
40505488 |
T |
|
| Q |
100 |
caattacaataatatgcattttgtgtgagacaaatactttcacacttccaaattctatagttaaattacttgttgattggtgcttgaagggtgtacaaca |
199 |
Q |
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| T |
40505489 |
caattacaataatatgcattttgtatgagacaaatactttgacacttccaaattctatagttaaattacttgttgattggtgcttgaagggtgtacaaca |
40505588 |
T |
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| Q |
200 |
aaagaactatgagaataataagtg |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
40505589 |
aaagaactatgagaataataagtg |
40505612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 22137883 - 22138103
Alignment:
| Q |
4 |
atgtatgaaaagagaataaca-gtccgaggacagaaattgtttcaaggactcaagtggaagaagcaatagaacaggaatagaaacaggagaagccatcaa |
102 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22137883 |
atgtatgaaaagagaataacaagtccgaggacagaaattgtgtcaaggactcaagtggaagaagcaatagaacaggaatagaaacaggagaagccatcaa |
22137982 |
T |
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| Q |
103 |
ttacaataatatgcattttgtgtgagacaaatactttcacacttccaaattctatagttaaattacttgttgattggtgcttgaagggtgtacaacaaaa |
202 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22137983 |
ttacaataatatgcattttgtatgagacaaatactttgacacttccaaattctatagttaaattacttgttgattggtgcttgaagggtgtacaacaaaa |
22138082 |
T |
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| Q |
203 |
gaactatgagaataataagtg |
223 |
Q |
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||||||||||||||||||||| |
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| T |
22138083 |
gaactatgagaataataagtg |
22138103 |
T |
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