View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3259_high_2 (Length: 483)
Name: NF3259_high_2
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3259_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 106 - 473
Target Start/End: Complemental strand, 9878690 - 9878323
Alignment:
| Q |
106 |
ggatttttaatatgaaatcggtctaacggtagactctcatatttttggtaaaatttcaataaaatattatttttattcccacatactagtttgataaatt |
205 |
Q |
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| T |
9878690 |
ggatttttaatatgaactcagtctaacggtagactctcatatttttggtaaaatttcaataaaatattatttttattcccatgtaatagtttgataaatt |
9878591 |
T |
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| Q |
206 |
tattcttattgactattaagagtataatgaaattgagaataatatacataaatttttaagtattattgaaataaaattatcaatgccccattgaaaaaat |
305 |
Q |
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| T |
9878590 |
tattcttattgactattaagagtataatgaaattgagaataatatacataaatttttaagtattattgaaataaaattatcaatgccccattgaaaaaat |
9878491 |
T |
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| Q |
306 |
aaaatgacatttatttatatatagggatatcaccttgtgagccaaacaaaggccttactgcagctagaccccttctttgcaatgccttcctttgcttcca |
405 |
Q |
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| T |
9878490 |
aaaatgacatttatttatatatagggatatcaccttgtgagccaaacaaaggccttactgcagctagaccccttctttgcaatgccttccgttgcttcca |
9878391 |
T |
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| Q |
406 |
atttcaatatttctaccaaatttagattcattgttggatttgattcatgcattagttccaatctctgc |
473 |
Q |
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| T |
9878390 |
atttcaatatttctaccaaatttagattcgttgttggatttgattcatgcattagttccaatctctgc |
9878323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 325 - 473
Target Start/End: Complemental strand, 9872569 - 9872421
Alignment:
| Q |
325 |
tatagggatatcaccttgtgagccaaacaaaggccttactgcagctagaccccttctttgcaatgccttcctttgcttccaatttcaatatttctaccaa |
424 |
Q |
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| T |
9872569 |
tataggtatatcaccttgtgagccaaacaaaggccttactgcagctagaccctttctttgcattgccttctgttgcttccaatttcaatatttcaactaa |
9872470 |
T |
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| Q |
425 |
atttagattcattgttggatttgattcatgcattagttccaatctctgc |
473 |
Q |
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| T |
9872469 |
atttagatttgttgttggatttgattcatgcattagttccaatctctgc |
9872421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 9879180 - 9879095
Alignment:
| Q |
17 |
acaaaagtctatacactctatctcatgtcgattattactttcaaacacataagaaaaatttaaaataaatggaaaagtgtaataat |
102 |
Q |
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| T |
9879180 |
acaaaagtctatacactctatctcatgtcgattattacttttaaacacataagaaaaatttaaaataaatggaaaaatgtaataat |
9879095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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