View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3259_high_20 (Length: 236)
Name: NF3259_high_20
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3259_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 36722512 - 36722731
Alignment:
| Q |
1 |
aataattgttactttgaacctaaacaaaattccaaactacgtgcgtgaggctagaaaaagaaaaggcctagaggaagcattttgcgatacac--gtccat |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36722512 |
aataattgttactttgaacctaaacaaaattccaaactacgtgcgtgaggctagaaaaagaaaaggcctagaggaagcattttgcgatacacatgtccat |
36722611 |
T |
|
| Q |
99 |
ttcatgttgcacctttactgctaactaaggggtccatgctgaagttgacattgcaattatattttacgnnnnnnnnnnccactttattgatttctcacgc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36722612 |
ttcatgttgcacctttactgctaactaaggggtccatactgaagttgacattgcaattatattttacgttttttttttccactttattgatttctcacgc |
36722711 |
T |
|
| Q |
199 |
gtcctatataattcagacaa |
218 |
Q |
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|||||||||| || |||||| |
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| T |
36722712 |
gtcctatatagtttagacaa |
36722731 |
T |
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