View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3259_high_22 (Length: 223)
Name: NF3259_high_22
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3259_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 7482288 - 7482411
Alignment:
| Q |
84 |
gtttagatccgaaatgatgtaaacatacttgtgaattgcagaaccaaaatatattacaagtggaactcaattagtgaggaagtatttcttggaagaagac |
183 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
7482288 |
gtttagatctgtaatgatgtaatcatacttgtgaattgcataaccaaaatatgttgcaagtggaactcaattagtaaggaagtgtttcttggaagaagac |
7482387 |
T |
|
| Q |
184 |
gctttc-aattatttataccctca |
206 |
Q |
| |
|
|||||| |||||| |||||||||| |
|
|
| T |
7482388 |
gctttcaaattatgtataccctca |
7482411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 7491157 - 7491251
Alignment:
| Q |
113 |
tgtgaattgcagaaccaaaatatattacaagtggaactcaattagtgaggaagtatttcttggaagaagacgctttcaattatttataccctcat |
207 |
Q |
| |
|
||||||||||| |||| |||||| || |||| ||||||||||| ||| |||| |||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
7491157 |
tgtgaattgcataaccgaaatatgttgtgagtgcaactcaattagggagaaagtgtttcttggaagaagacactttcaattacttataccctcat |
7491251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 7482220 - 7482257
Alignment:
| Q |
16 |
gaaccctaatcattgcgataaatgttcaaatccgtgag |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7482220 |
gaaccctaatcattgcgataaatgttcaaatccgtgag |
7482257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 7491078 - 7491110
Alignment:
| Q |
21 |
ctaatcattgcgataaatgttcaaatccgtgag |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
7491078 |
ctaatcattgcgataaatgttcaaatccgtgag |
7491110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University