View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3259_high_5 (Length: 402)
Name: NF3259_high_5
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3259_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 7 - 183
Target Start/End: Original strand, 32853111 - 32853287
Alignment:
| Q |
7 |
agcctttaaacacaggataatcaggttagactaagagcaattacacaagtgatttcaacaccacattttcaccaaaaaccttaagtacttgttgtatgag |
106 |
Q |
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| T |
32853111 |
agcctttaaacacaggataatcaggttagactaagagcaattacacaagtgatttcaacaccacattttcaccaaaaaccttaagtacttgttgtatgag |
32853210 |
T |
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| Q |
107 |
cttcctcacttacaaattgtccaacactcacatccaatgtgagactcctttactcgcgcttgacaaaccaacacatg |
183 |
Q |
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| T |
32853211 |
cttcctcacttacaaattgtccaacactcacatccaatgggagactcctttactcgcacttgacaaaccaacacatg |
32853287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 224 - 386
Target Start/End: Original strand, 32853463 - 32853622
Alignment:
| Q |
224 |
tattctctcaaattagatagctataatgtcataattgaatgtgttcttattcttctacattcaagaatgtttcacaaacagttacttcaacaagaattta |
323 |
Q |
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| T |
32853463 |
tattctctcaaaatagataactataatgtcataattgaatgtattcttattcttc---attcaagaatgtttcacaaacagttacttcaacaagaattta |
32853559 |
T |
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| Q |
324 |
tttaagaaaataaaaaagcattagtgaaagtataaaaagtaaagggtacatacccgagaaatg |
386 |
Q |
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| T |
32853560 |
tttaagaaaataaaaaagcattagtgaaagtataaaaagtaaagggtacatacccgagaaatg |
32853622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 32853384 - 32853424
Alignment:
| Q |
187 |
actactacagatcacagggtggtt-gtgagattaacaatat |
226 |
Q |
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| T |
32853384 |
actactacagatcacagggtggttggtgagattaacaatat |
32853424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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