View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3259_high_6 (Length: 396)
Name: NF3259_high_6
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3259_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 7 - 194
Target Start/End: Original strand, 18452776 - 18452963
Alignment:
| Q |
7 |
gaacataagaagtgtgctgtcggagctggtgagatcgtcggaggatggtgatgttctgtttgttcattatagtggacatggtacgcgtcttcctgctgaa |
106 |
Q |
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| T |
18452776 |
gaacataagacgtgttctgtcggagctggtgagatcgtcggaggatggtgatgttctgtttgttcattatagtggacatggtactcgtcttcctgctgaa |
18452875 |
T |
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| Q |
107 |
actggagaggatgatgatactggttttgatgaatgtattgttccttctgatatgaatctcatcactggttcgtaccaagatatctctc |
194 |
Q |
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| T |
18452876 |
actggagaggatgatgatactggttttgatgaatgtattgttccttctgatatgaatctcatcactggttcgtaccaagatatctctc |
18452963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 261 - 396
Target Start/End: Original strand, 18453019 - 18453154
Alignment:
| Q |
261 |
gatcttttggttaaagattaggtagttcttcatcttaaagttgttttaaaattattattactttttgacaaaaaagtgttttaagaattgagaaacgatt |
360 |
Q |
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| T |
18453019 |
gatcttttggttaaagattaggtagtgcttcatcttaaagttgttttaaaattattattactttttgacaaaaaagtgttttaagaattgagaaacgatt |
18453118 |
T |
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| Q |
361 |
tcaacgtgtgtttgatttgattttacgataaggaat |
396 |
Q |
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| T |
18453119 |
acaacatgtgtttgatttgattctacgataaggaat |
18453154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 26837089 - 26837200
Alignment:
| Q |
65 |
tttgttcattatagtggacatggtacgcgtcttcctgctgaaactggagaggatgatgatactggttttgatgaatgtattgttccttctgatatgaatc |
164 |
Q |
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| T |
26837089 |
tttgtccactatagtggtcatggcacccgtctccctgctgagaccggggaggacgatgatactggctatgatgagtgcattgttcccacagatatgaatc |
26837188 |
T |
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| Q |
165 |
tcatcactggtt |
176 |
Q |
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|||| ||||||| |
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| T |
26837189 |
tcattactggtt |
26837200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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