View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3259_high_9 (Length: 333)

Name: NF3259_high_9
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3259_high_9
NF3259_high_9
[»] chr3 (2 HSPs)
chr3 (12-300)||(28983912-28984193)
chr3 (29-120)||(34147421-34147512)
[»] chr4 (8 HSPs)
chr4 (29-126)||(45113342-45113439)
chr4 (29-126)||(27366439-27366536)
chr4 (29-124)||(30200784-30200879)
chr4 (29-128)||(48945028-48945127)
chr4 (29-126)||(1838770-1838867)
chr4 (125-231)||(27758320-27758427)
chr4 (160-230)||(35434398-35434469)
chr4 (97-133)||(2299592-2299628)
[»] chr1 (3 HSPs)
chr1 (29-129)||(34917338-34917438)
chr1 (29-126)||(34024748-34024845)
chr1 (83-128)||(43742339-43742384)
[»] chr5 (3 HSPs)
chr5 (29-123)||(1592512-1592606)
chr5 (29-129)||(7771196-7771296)
chr5 (29-125)||(7955094-7955190)
[»] chr8 (5 HSPs)
chr8 (29-126)||(18166286-18166383)
chr8 (29-126)||(15362407-15362504)
chr8 (29-123)||(20266147-20266241)
chr8 (29-123)||(21052776-21052870)
chr8 (271-317)||(993728-993774)
[»] chr7 (4 HSPs)
chr7 (29-126)||(21868242-21868339)
chr7 (29-129)||(4057860-4057960)
chr7 (29-124)||(47022927-47023025)
chr7 (137-240)||(13073957-13074059)
[»] chr2 (3 HSPs)
chr2 (29-124)||(604299-604393)
chr2 (29-127)||(12335724-12335822)
chr2 (147-213)||(35400932-35400998)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 300
Target Start/End: Original strand, 28983912 - 28984193
Alignment:
Q  12 ataggggtatgggtggatatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctccc 111  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||| |||||||    
T  28983912 ataggggtatgggtgggtatattttttttgttcgcttctaccaaacataggaatatcgtatttaatgcccttattctcataaatatattttttatctccc 28984011  T
Q  112 aaacaaacaccccctaagaaaaggaaaataacataatcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaatgta 211  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28984012 aaacaaacaccccctaaggaaaggaaaataacataatcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaatgta 28984111  T
Q  212 ataagtgcaactctacttgatcacaaaattctttcatttaacgaaatttaacgaagatatatcatttcccaccccttcaaattcacctt 300  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28984112 ataagtgcaa-------tgatcacaaaattctttcatttaacgaaatttaacgaagatatatcatttcccaacccttcaaattcacctt 28984193  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 34147512 - 34147421
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaaca 120  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||| |||||| |||| ||||||||||||||||    
T  34147512 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgccattattcccaggaatatattttttatctcccaaacaaaca 34147421  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 45113342 - 45113439
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 126  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||| ||||||||||||||||||||||    
T  45113342 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattctcaggaatatattttttatctcccaaacaaacaccccct 45113439  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 27366439 - 27366536
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 126  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||    
T  27366439 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccct 27366536  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 30200784 - 30200879
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacacccc 124  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||    
T  30200784 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacacccc 30200879  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 48945028 - 48945127
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccctaa 128  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||||    
T  48945028 tatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccctaa 48945127  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 1838770 - 1838867
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 126  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||  ||||||||| |||| ||||||||||||||||||||||    
T  1838770 tatattatttttgttcccttctaccaaatataggaatatcgtatttaatgcccttattcctagaaatatattttttatctcccaaacaaacaccccct 1838867  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 27758320 - 27758427
Alignment:
Q  125 ctaagaaaaggaaaataacataatcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaatgtaat-aagtgcaact 223  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||||||| |||| ||||||||| ||| |||||||||  |||||||| |||| |||||    
T  27758320 ctaagaaaagggaaataacataatcataaatttagaaaaggaaataaactaaaccataaaattagaaaaaggaaataacttaatgtaatcaagttcaact 27758419  T
Q  224 ctacttga 231  Q
    ||||||||    
T  27758420 ctacttga 27758427  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 35434469 - 35434398
Alignment:
Q  160 gaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaatgtaat-aagtgcaactctacttg 230  Q
    ||||| ||||||| |||||||||||||||| || || |||||||  || ||||| |||||||||||||||||    
T  35434469 gaaagaaaataaattgaaccgtaaaattagaaatggaaaataacttaacgtaatcaagtgcaactctacttg 35434398  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 2299628 - 2299592
Alignment:
Q  97 tacttttcatctcccaaacaaacaccccctaagaaaa 133  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  2299628 tactttttatctcccaaacaaacgccccctaagaaaa 2299592  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 34917438 - 34917338
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccctaa 128  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||||    
T  34917438 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccctaa 34917339  T
Q  129 g 129  Q
    |    
T  34917338 g 34917338  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 34024845 - 34024748
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 126  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  | |||||| ||| |||||| |||| ||||||||||||||||||||||    
T  34024845 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatacctttattcccaggaatatattttttatctcccaaacaaacaccccct 34024748  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 43742339 - 43742384
Alignment:
Q  83 tattctcagaaatatacttttcatctcccaaacaaacaccccctaa 128  Q
    ||||| ||| ||||||||||| ||||||||||||||| ||||||||    
T  43742339 tattcccaggaatatactttttatctcccaaacaaacgccccctaa 43742384  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 1592606 - 1592512
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccc 123  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||    
T  1592606 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccagaaatatattttttatctcccaaacaaacaccc 1592512  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 7771196 - 7771296
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccctaa 128  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||  |  |||||| |||| ||||||||||||||||||||||||    
T  7771196 tatattatttttgtttccttctaccaaacatagaaatatcgtatttaatgtccttattcctaagaatatattttttatctcccaaacaaacaccccctaa 7771295  T
Q  129 g 129  Q
    |    
T  7771296 g 7771296  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 7955190 - 7955094
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccc 125  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| | ||| |||||| |||| |||||||||||||||||||||    
T  7955190 tatattatttttgttcccttctaccaaacataggaatatcatatttaatgcccttatacccaggaatatattttttatctcccaaacaaacaccccc 7955094  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 18166383 - 18166286
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 126  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||    
T  18166383 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcacaggaatatattttttatctcccaaacaaacaccccct 18166286  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 15362504 - 15362407
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 126  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||    
T  15362504 tatattatttttgttcccttctaccaaacataggaatatcatatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccct 15362407  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 20266241 - 20266147
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccc 123  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||  ||||||||| |||| |||||||||||||||||||    
T  20266241 tatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcctagaaatatattttttatctcccaaacaaacaccc 20266147  T

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Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 21052870 - 21052776
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccc 123  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||  ||||||||| |||| |||||||||||||||||||    
T  21052870 tatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcctagaaatatattttttatctcccaaacaaacaccc 21052776  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 993774 - 993728
Alignment:
Q  271 tatcatttcccaccccttcaaattcaccttgtcctcaaggtgaaatg 317  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||    
T  993774 tatcattctccaccccttcagactcaccttgtcctcaaggtgaaatg 993728  T

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Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 21868242 - 21868339
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccct 126  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||    
T  21868242 tatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccct 21868339  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 4057960 - 4057860
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacaccccctaa 128  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||||    
T  4057960 tatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccctaa 4057861  T
Q  129 g 129  Q
    |    
T  4057860 g 4057860  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 47023025 - 47022927
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatactttt---catctcccaaacaaacacccc 124  Q
    |||||||||||||||||||||||||||| ||| |||||| |||||||||  |||||||||||| |||||| ||||    ||||||||||||||||||||    
T  47023025 tatattatttttgttcccttctaccaaatataggaatattgtatttaatacccttattctcagtaatatattttttactatctcccaaacaaacacccc 47022927  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 13073957 - 13074059
Alignment:
Q  137 aaataacataatcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaatgtaat-aagtgcaactctacttgatcac 235  Q
    ||||| || |||| ||||| |||||||||||||||||  |||| ||||||||| ||| ||| | ||| || |||||| |||||| |||||||||| ||||    
T  13073957 aaatagcagaatcgtaaatttaggaaaggaaataaacataaccataaaattag-aaaaggagaaaaccgattgtaatcaagtgc-actctacttgctcac 13074054  T
Q  236 aaaat 240  Q
    |||||    
T  13074055 aaaat 13074059  T

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Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 604299 - 604393
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacacccc 124  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||| ||||  |||||||||||||||||||    
T  604299 tatattatttttgttcccttctaccaaacataggaatatcatatttaatgcccttattctcataaatata-tttttttctcccaaacaaacacccc 604393  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 12335822 - 12335724
Alignment:
Q  29 tatattatttttgttcccttctaccaaacataagaatatcgtatttaatgtccttattctcagaaatatacttttcatctcccaaacaaacacccccta 127  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||  ||||||  ||| |||||| |||| |||||||||||||||||||||||    
T  12335822 tatattatttttgttcccttctaccaaacataggaatatcatatttaatgctcttatttccaggaatatattttttatctcccaaacaaacacccccta 12335724  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 35400998 - 35400932
Alignment:
Q  147 atcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataacggaatgtaat 213  Q
    ||||||||| |||||||||||||||| |||||| ||||||||| ||| |||| |||| |||||||||    
T  35400998 atcataaatttaggaaaggaaataaattgaaccataaaattagaaaaaggaagtaaccgaatgtaat 35400932  T

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