View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3259_low_11 (Length: 316)
Name: NF3259_low_11
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3259_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 3489396 - 3489106
Alignment:
| Q |
16 |
cagaaccatcagcagcaataccccaatagaggccaatatggccatcagaaccctaatcaaaaacaaacataattgtcaattaattaatcacaaaaggtga |
115 |
Q |
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| T |
3489396 |
cagaaccatcagcagcaataccccaatagaggccaatatggccatcagaaccctaatcaaacacaaacataattgtcaattaattaatcacaaaaggtga |
3489297 |
T |
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| Q |
116 |
atttttatttagaggctaattaagaaagtgactcacagatgcagcaaaaaccgttccatccttgtggtcatagatcacaaatgcaaaactgccttcaagt |
215 |
Q |
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| T |
3489296 |
atttttatttagaggctaattaagaaagtgactcacagatgcagcaaaaacagttccgtccttatggtcatagatcacaaatgcaaaactgccttcaagt |
3489197 |
T |
|
| Q |
216 |
cctttgaggacttgatcagcagggtatggacccctgtcacgaagtgtccgatatgcttcaatgataaacatagcctcattgcctccctttg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
3489196 |
cctttgaggacttgatcagcagggtatggacccctgtcacgaagtgtccgatacgcttcaataataaacatagcctcattgcctccctttg |
3489106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 33569100 - 33568996
Alignment:
| Q |
182 |
gtcatagatcacaaatgcaaaactgccttcaagtcctttgaggacttgatcagcagggtatggacccctgtcacgaagtgtccgatatgcttcaatgata |
281 |
Q |
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| T |
33569100 |
gtcatagacaacaaaggcaaaactgccatcaagttccttgacaacttgatctggtggatatggaccacggtcacggagtgtcctataagcttcaatcaga |
33569001 |
T |
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| Q |
282 |
aacat |
286 |
Q |
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| T |
33569000 |
aacat |
33568996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 134 - 306
Target Start/End: Complemental strand, 35549498 - 35549326
Alignment:
| Q |
134 |
attaagaaagtgactcacagatgcagcaaaaaccgttccatccttgtggtcatagatcacaaatgcaaaactgccttcaagtcctttgaggacttgatca |
233 |
Q |
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||||| |||||| || || |||||| ||||||| |||||||| |||| |||||||| | |||| ||||||| || |||||| |||||||||||||||| |
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| T |
35549498 |
attaaaaaagtggcttactgatgcaacaaaaacagttccatctttgtcatcatagatgataaatccaaaactaccatcaagttctttgaggacttgatct |
35549399 |
T |
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| Q |
234 |
gcagggtatggacccctgtcacgaagtgtccgatatgcttcaatgataaacatagcctcattgcctccctttg |
306 |
Q |
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|||||| |||||||||||||||||||||||| ||| ||||||||||| || | ||||||||| |||||||| |
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| T |
35549398 |
gcagggaatggacccctgtcacgaagtgtcctataagcttcaatgatgaaatttgcctcattggttccctttg |
35549326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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