View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3259_low_14 (Length: 267)
Name: NF3259_low_14
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3259_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 19901571 - 19901680
Alignment:
| Q |
22 |
cccaacatgttggagtcacttctagagatggtttctaaaaacaaaacggatcaatcaatgttaattgaaattaaaatgcttaacctaacaaatacaatta |
121 |
Q |
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| T |
19901571 |
cccaacatgttgtagtcacttctggagatggtttctaaaaacaaaacggatcaatcaatgttaattgaaattaaaatgcttaacctaacaaatacaatta |
19901670 |
T |
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| Q |
122 |
aactcaaatt |
131 |
Q |
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|||| ||||| |
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| T |
19901671 |
aactaaaatt |
19901680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 34801079 - 34801188
Alignment:
| Q |
22 |
cccaacatgttggagtcacttctagagatggtttctaaaaacaaaacggatcaatcaatgttaattgaaattaaaatgcttaacctaacaaatacaatta |
121 |
Q |
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||||||||||||| ||||| | | ||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| | |
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| T |
34801079 |
cccaacatgttggtgtcacatttgcagatgttttctaaaaacaaaacggattaatcaatgttaattaaaattaaaatgtttaacctaacaaatacaataa |
34801178 |
T |
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| Q |
122 |
aactcaaatt |
131 |
Q |
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|||| ||||| |
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| T |
34801179 |
aactaaaatt |
34801188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 28007900 - 28007825
Alignment:
| Q |
135 |
tctgttttcgctcttagtttttgccttgcttttccattcattctcactccatttttcatccaatttcttacgcatt |
210 |
Q |
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||||||||||| ||| ||| || ||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28007900 |
tctgttttcgccattaatttgtgacttccttttccattcattctcactccatttttcatccaattttttacgcatt |
28007825 |
T |
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