View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3259_low_21 (Length: 236)

Name: NF3259_low_21
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3259_low_21
NF3259_low_21
[»] chr1 (4 HSPs)
chr1 (24-235)||(36721941-36722152)
chr1 (24-199)||(24158018-24158193)
chr1 (24-143)||(6468629-6468748)
chr1 (126-235)||(37104999-37105107)
[»] chr5 (1 HSPs)
chr5 (24-235)||(35875369-35875579)
[»] chr3 (2 HSPs)
chr3 (24-235)||(39915024-39915233)
chr3 (74-167)||(33752661-33752754)
[»] chr4 (6 HSPs)
chr4 (26-235)||(32295611-32295819)
chr4 (23-185)||(11896020-11896181)
chr4 (27-167)||(3243613-3243753)
chr4 (50-186)||(25376171-25376306)
chr4 (26-169)||(13808445-13808595)
chr4 (93-231)||(40575307-40575444)
[»] chr7 (3 HSPs)
chr7 (24-199)||(490935-491109)
chr7 (122-235)||(47488388-47488500)
chr7 (86-161)||(42883769-42883844)
[»] chr2 (1 HSPs)
chr2 (24-131)||(6372661-6372768)
[»] scaffold0361 (1 HSPs)
scaffold0361 (86-166)||(6446-6526)
[»] chr8 (1 HSPs)
chr8 (98-169)||(4940550-4940621)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 235
Target Start/End: Complemental strand, 36722152 - 36721941
Alignment:
Q  24 tgtaaatcaaaagagtccaaagattgactaaaatttgctagccattccgccgatttgtttctttcacgccatgtatggttgatttgaacttgacaactca 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36722152 tgtaaatcaaaagagtccaaagattgactaaaatttgctagccattccgccgatttgtttctttcacgccatgtatggttgatttgaacttgacaactca 36722053  T
Q  124 tgttttttagatcacaaatgtgccaaatcaaggtaggaacatttcccgttgatgttacatttcttagttaccatgttgaccaagactttggagtcgctct 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  36722052 tgttttttagatcacaaatgtgccaaatcaaggtaggaacatttcccgttgatgttgcatttcttagttaccatgtcgaccaagactttggagtcgctct 36721953  T
Q  224 ccacttgtaggt 235  Q
    ||||||||||||    
T  36721952 ccacttgtaggt 36721941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 24158193 - 24158018
Alignment:
Q  24 tgtaaatcaaaagagtccaaagattgactaaaatttgctagccattccgccgatttgtttc-tttcacgccatgtatggttgatttgaacttgacaactc 122  Q
    ||||||||||| | |||| ||||| |||||||||| ||| |||| || || ||| |||||| |||||||||||||||||||||| ||||  || ||||||    
T  24158193 tgtaaatcaaaggtgtccgaagatagactaaaattagcttgccaatctgctgatctgtttcctttcacgccatgtatggttgatatgaatatgccaactc 24158094  T
Q  123 atgttttttagatcacaaatgtgccaaatcaaggtaggaacatttcccgttgatgttacatttcttagttaccatgt 199  Q
    ||||||||||| |||| |||| ||  ||||||||||||||| ||| || ||||||||| |||||   ||||||||||    
T  24158093 atgttttttaggtcacgaatgcgctgaatcaaggtaggaac-ttttccattgatgttatatttccatgttaccatgt 24158018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 6468629 - 6468748
Alignment:
Q  24 tgtaaatcaaaagagtccaaagattgactaaaatttgctagccattccgccgatttgtttctttcacgccatgtatggttgatttgaacttgacaactca 123  Q
    ||||||||||| | |||||||||| |||||||||| |||||||| || || |||||||||| ||||||| ||||||||||||| ||||| || |||||||    
T  6468629 tgtaaatcaaatgtgtccaaagatagactaaaattagctagccaatctgctgatttgtttccttcacgctatgtatggttgatatgaacatgccaactca 6468728  T
Q  124 tgttttttagatcacaaatg 143  Q
    | |||||||| || ||||||    
T  6468729 tattttttaggtcccaaatg 6468748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 37105107 - 37104999
Alignment:
Q  126 ttttttagatcacaaatgtgccaaatcaaggtaggaacatttcccgttgatgttacatttcttagttaccatgttgaccaagactttggagtcgctctcc 225  Q
    |||||||||| || |||| ||||||| ||||||| |||||| | | |||||||||||||| | |||||| |||| |||||| |||||||||||||||||     
T  37105107 ttttttagattacgaatgcgccaaattaaggtagaaacatt-ctcattgatgttacatttttcagttactatgtcgaccaaaactttggagtcgctctct 37105009  T
Q  226 acttgtaggt 235  Q
    ||||||||||    
T  37105008 acttgtaggt 37104999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 235
Target Start/End: Complemental strand, 35875579 - 35875369
Alignment:
Q  24 tgtaaatcaaaagagtccaaagattgactaaaatttgctagccattccgccgatttgtttctttcacgccatgtatggttgatttgaacttgacaactca 123  Q
    |||| |||||| ||||| |||||| ||||||||||||||||||| ||||||||| |||||| |||||||||| ||||||||||||||||||| |||||||    
T  35875579 tgtatatcaaaggagtctaaagatagactaaaatttgctagccaatccgccgatctgtttccttcacgccatatatggttgatttgaacttgccaactca 35875480  T
Q  124 tgttttttagatcacaaatgtgccaaatcaaggtaggaacatttcccgttgatgttacatttcttagttaccatgttgaccaagactttggagtcgctct 223  Q
    |  |||||||||||| |||| ||| |||||||||||||||| ||| | |||||||||||||||  ||||||||| | |||||| ||||||||||||||||    
T  35875479 tagtttttagatcacgaatgcgccgaatcaaggtaggaaca-ttctcattgatgttacatttcccagttaccatatcgaccaaaactttggagtcgctct 35875381  T
Q  224 ccacttgtaggt 235  Q
    ||||||| ||||    
T  35875380 ccacttgaaggt 35875369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 24 - 235
Target Start/End: Complemental strand, 39915233 - 39915024
Alignment:
Q  24 tgtaaatcaaaagagtccaaagattgactaaaatttgctagccattccgccgatttgtttctttcacgccatgtatggttgatttgaacttgacaactca 123  Q
    ||||| ||||| ||||| |||||| | ||||| ||||||||||| | ||||||  |||||||| |||| ||||||||||||||||||||||| |||||||    
T  39915233 tgtaattcaaaggagtctaaagatagtctaaactttgctagccaattcgccgacatgtttctt-cacgtcatgtatggttgatttgaacttgccaactca 39915135  T
Q  124 tgttttttagatcacaaatgtgccaaatcaaggtaggaacatttcccgttgatgttacatttcttagttaccatgttgaccaagactttggagtcgctct 223  Q
    ||||||||||||||| |||||||| |||||||  | |||||||| | |||||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  39915134 tgttttttagatcacgaatgtgccgaatcaagacacgaacattttc-gttgatgttacatttcctagttaccatgtcgaccaaaactttggagtcgctct 39915036  T
Q  224 ccacttgtaggt 235  Q
    ||||||||||||    
T  39915035 ccacttgtaggt 39915024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 33752754 - 33752661
Alignment:
Q  74 cgatttgtttctttcacgccatgtatggttgatttgaacttgacaactcatgttttttagatcacaaatgtgccaaatcaaggtaggaacattt 167  Q
    ||||||||||| |||| ||  |||||||||||| |||||||| ||| ||||| | ||||| |||   ||| |||||||||||||||||||||||    
T  33752754 cgatttgtttccttcaagctgtgtatggttgatctgaacttgtcaattcatgatctttaggtcatggatgcgccaaatcaaggtaggaacattt 33752661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 26 - 235
Target Start/End: Original strand, 32295611 - 32295819
Alignment:
Q  26 taaatcaaaagagtccaaagattgactaaaatttgctagccattccgccgatttgtttctttcacgccatgtatggttgatttgaacttgacaactcatg 125  Q
    |||||||||||| ||||||||  |||||||||| | ||| || | || || | |||||| |||||||| ||||||||||||||||||||| |||||||||    
T  32295611 taaatcaaaagaatccaaagagagactaaaattagttagtcaattcgtcgttatgtttccttcacgccttgtatggttgatttgaacttgtcaactcatg 32295710  T
Q  126 ttttttagatcacaaatgtgccaaatcaaggtaggaacatttcccgttgatgttacatttcttagttaccatgttgaccaagactttggagtcgctctcc 225  Q
    ||||||||||||| ||||  || |||||||||||||||| ||||| || ||||||||||||   ||||||| ||| ||||| ||||| ||||||||||||    
T  32295711 ttttttagatcacgaatgcaccgaatcaaggtaggaaca-ttcccattaatgttacatttccatgttaccacgttaaccaaaactttagagtcgctctcc 32295809  T
Q  226 acttgtaggt 235  Q
    ||||||||||    
T  32295810 acttgtaggt 32295819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 11896020 - 11896181
Alignment:
Q  23 gtgtaaatcaaaagagtccaaagattgactaaaatttgctagccattccgccgatttgtttctttcacgccatgtatggttgatttgaacttgacaactc 122  Q
    ||||| |||||| | |||||||||| |||||||||| |||||||| || || ||| | |||| ||||||||||||||||||||| ||||| || ||||||    
T  11896020 gtgtagatcaaaggcgtccaaagatagactaaaattagctagccaatctgctgatctatttccttcacgccatgtatggttgatatgaacatgccaactc 11896119  T
Q  123 atgttttttagatcacaaatgtgccaaatcaaggtaggaacatttcccgttgatgttacattt 185  Q
    ||||||||||| |||| |||| ||  ||| |||||||||||||||  ||||||||||||||||    
T  11896120 atgttttttaggtcacgaatgcgctgaattaaggtaggaacattt-tcgttgatgttacattt 11896181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 167
Target Start/End: Complemental strand, 3243753 - 3243613
Alignment:
Q  27 aaatcaaaagagtccaaagattgactaaaatttgctagccattccgccgatttgtttctttcacgccatgtatggttgatttgaacttgacaactcatgt 126  Q
    |||||||| | |||||||||| ||||||| || |||| ||| || || |||||||||| |||| |||||||||||||||| ||||| ||  |||||||||    
T  3243753 aaatcaaaggtgtccaaagatagactaaagttagctaaccaatctgctgatttgtttccttcaggccatgtatggttgatctgaacatgctaactcatgt 3243654  T
Q  127 tttttagatcacaaatgtgccaaatcaaggtaggaacattt 167  Q
    ||||||| |||| |||||||| |||||||||||||||||||    
T  3243653 tttttaggtcacgaatgtgccgaatcaaggtaggaacattt 3243613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 25376171 - 25376306
Alignment:
Q  50 actaaaatttgctagccattccgccgatttgtttctttcacgccatgtatggttgatttgaacttgacaactcatgttttttagatcacaaatgtgccaa 149  Q
    |||||| || |||||||| || || |||||||||| ||||||||| ||||||||||| ||||| || ||||||||||||||||| |||  |||| |||||    
T  25376171 actaaagttagctagccaatctgctgatttgtttccttcacgccaggtatggttgatctgaacatgccaactcatgttttttaggtcatgaatgcgccaa 25376270  T
Q  150 atcaaggtaggaacatttcccgttgatgttacatttc 186  Q
    |||||||||||||||||| || |||||||||||||||    
T  25376271 atcaaggtaggaacattt-ccattgatgttacatttc 25376306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 13808595 - 13808445
Alignment:
Q  26 taaatcaaaagagtccaaagattgactaaaatttgctagccattccgccgatttgtttctttcacgccatgtatggttg-------atttgaacttgaca 118  Q
    ||||||||| | || ||||||| |||||||||| |||||||| ||  | |||||||||| ||||| |||||||||||||       || ||||| || ||    
T  13808595 taaatcaaaggtgttcaaagatagactaaaattagctagccagtctactgatttgtttccttcacaccatgtatggttgatatgacatatgaacatgcca 13808496  T
Q  119 actcatgttttttagatcacaaatgtgccaaatcaaggtaggaacatttcc 169  Q
    ||||||||||||||| || | |||| | |||||||||||||||||||||||    
T  13808495 actcatgttttttagctcccgaatgcgacaaatcaaggtaggaacatttcc 13808445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 40575307 - 40575444
Alignment:
Q  93 catgtatggttgatttgaacttgacaactcatgttttttagatcacaaatgtgccaaatcaaggtaggaacatttcccgttgatgttacatttcttagtt 192  Q
    ||||||| |||||||||||||||  ||||| |||||||||| | || |||  ||||||||| |||||||||| |||   ||||| ||||||||||| |||    
T  40575307 catgtatagttgatttgaacttgctaactcgtgttttttaggttacgaatacgccaaatcagggtaggaaca-ttctaattgatattacatttctttgtt 40575405  T
Q  193 accatgttgaccaagactttggagtcgctctccacttgt 231  Q
    ||||| |  |  || ||||| ||||||||||||| ||||    
T  40575406 accatatctaataaaacttttgagtcgctctccatttgt 40575444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 491109 - 490935
Alignment:
Q  24 tgtaaatcaaaagagtccaaagattgactaaaatttgctagccattccgccgatttgtttctttcacgccatgtatggttgatttgaacttgacaactca 123  Q
    ||||||||||| | |||||||||| |||||||||| |||||||| || |  ||| |||||| ||||| ||||||||||||||| ||||| || |||||||    
T  491109 tgtaaatcaaaggtgtccaaagatagactaaaattagctagccaatctgttgatctgtttccttcactccatgtatggttgatatgaacatgccaactca 491010  T
Q  124 tgttttttagatcacaaatgtgccaaatcaaggtaggaacatttcccgttgatgttacatttcttagttaccatgt 199  Q
    |||||||||| |||| |||| ||  ||||||||||||||||||| || |||||||||||||||   ||||||||||    
T  491009 tgttttttaggtcacgaatgcgctgaatcaaggtaggaacattt-ccattgatgttacatttccctgttaccatgt 490935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 47488500 - 47488388
Alignment:
Q  122 catgttttttagatcacaaatgtgccaaatcaaggtaggaacatttcccgttgatgttacatttcttagttaccatgttgaccaagactttggagtcgct 221  Q
    |||||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||||||||| | ||| || |||||||||| |||| ||||  |||    
T  47488500 catgttttttagatcacaaatgcgacaaatcaaggtaggaaca-ttcccattgatgttacatttccttgtttccctgttgaccaaaacttaggagctgct 47488402  T
Q  222 ctccacttgtaggt 235  Q
    ||||||||||||||    
T  47488401 ctccacttgtaggt 47488388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 42883769 - 42883844
Alignment:
Q  86 ttcacgccatgtatggttgatttgaacttgacaactcatgttttttagatcacaaatgtgccaaatcaaggtagga 161  Q
    ||||||| | |||||||| |||||||| || ||| |||||||||| |  ||||||||| ||||| |||||||||||    
T  42883769 ttcacgctaagtatggttaatttgaacatgccaattcatgtttttaaactcacaaatgcgccaagtcaaggtagga 42883844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 6372768 - 6372661
Alignment:
Q  24 tgtaaatcaaaagagtccaaagattgactaaaatttgctagccattccgccgatttgtttctttcacgccatgtatggttgatttgaacttgacaactca 123  Q
    |||||||||||  |||||||||||  ||||||||| |||||||| || ||||||||||||| ||||||||| |||||||||||||||||||| |||||||    
T  6372768 tgtaaatcaaagaagtccaaagatacactaaaattagctagccaatcagccgatttgtttccttcacgccaagtatggttgatttgaacttgccaactca 6372669  T
Q  124 tgtttttt 131  Q
    ||||||||    
T  6372668 tgtttttt 6372661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 6526 - 6446
Alignment:
Q  86 ttcacgccatgtatggttgatttgaacttgacaactcatgttttttagatcacaaatgtgccaaatcaaggtaggaacatt 166  Q
    |||||||||||||||||| |||  |||||| |||||||||| |||||| | || |||| ||| ||| ||||||| ||||||    
T  6526 ttcacgccatgtatggttaattcaaacttgccaactcatgtattttaggtaaccaatgcgccgaatgaaggtagaaacatt 6446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 4940621 - 4940550
Alignment:
Q  98 atggttgatttgaacttgacaactcatgttttttagatcacaaatgtgccaaatcaaggtaggaacatttcc 169  Q
    |||||||||||| ||||| |||||||||  ||||||||||| |||| ||| ||| |||||| || |||||||    
T  4940621 atggttgatttgtacttgccaactcatgcattttagatcacgaatgcgccgaatgaaggtaagagcatttcc 4940550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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