View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3259_low_3 (Length: 408)

Name: NF3259_low_3
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3259_low_3
NF3259_low_3
[»] chr4 (1 HSPs)
chr4 (10-401)||(43377567-43377958)
[»] chr3 (1 HSPs)
chr3 (30-401)||(34428556-34428927)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 43377958 - 43377567
Alignment:
Q  10 tcatcataaacatcaacatatccaaatgcatccctaccaggaggacattccaatgcagcttcaagaactctatgatgtataccatgagaatcaatagcat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43377958 tcatcataaacatcaacatatccaaatgcatccctaccaggaggacattccaatgcagcttcaagaactctatgatgtataccatgagaatcaatagcat 43377859  T
Q  110 atccacctttatgatcatgaccagagaaacaaaccttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttcctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43377858 atccacctttatgatcatgaccagagaaacaaaccttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttcctt 43377759  T
Q  210 agatgatgcaccaggatatagagacaaatgacaacaaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43377758 agatgatgcaccaggatatagagacaaatgacaacaaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattctatttgt 43377659  T
Q  310 ttctttccaatacctccattgaacatgagaagctttctttcaagtccaaccaaacctgttggactattcttatcttcatttggattcatctc 401  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  43377658 ttctttccaatacctccattgaacatgagaaaccttctttcaagtccaactaaacctgttggactattcttatcttcatttggattcttctc 43377567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 401
Target Start/End: Complemental strand, 34428927 - 34428556
Alignment:
Q  30 tccaaatgcatccctaccaggaggacattccaatgcagcttcaagaactctatgatgtataccatgagaatcaatagcatatccacctttatgatcatga 129  Q
    ||||||||||||  | || ||||||||||| |  |||||||||||||||||||| ||||  |||||||||||||| | ||| |||||||||||||| ||     
T  34428927 tccaaatgcatctgtgcccggaggacattcaagagcagcttcaagaactctatggtgtaccccatgagaatcaatggaatacccacctttatgatcgtgt 34428828  T
Q  130 ccagagaaacaaaccttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatata 229  Q
    ||||  | |    | || ||||||   ||||| ||||||||||| |||||||||||| |||||||||  |  || ||||  |||| ||||| ||||| ||    
T  34428827 ccagcaagaacggctttaacacaactgtatctgtgtatcaaattcatcacttcatcacaattccacagtagcgcctcctcggatgttgcacaaggatcta 34428728  T
Q  230 gagacaaatgacaacaaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgtttctttccaatacctccatt 329  Q
    ||| || ||| ||    || || ||||| ||||||||||| ||||| || || ||||||  || |||||||||||| |||| |||||||| |||||| ||    
T  34428727 gaggcagatggcatgtgacaaccactttctgtttcaatttggttgcatcctggagaataccatccaaccattccatctgttcctttccaacacctccgtt 34428628  T
Q  330 gaacatgagaagctttctttcaagtccaaccaaacctgttggactattcttatcttcatttggattcatctc 401  Q
     ||||| |||| | |||||||||| ||    |||    ||||||||||||||||||||||||||||| ||||    
T  34428627 aaacataagaaaccttctttcaagcccctttaaattatttggactattcttatcttcatttggattcttctc 34428556  T

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