View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3259_low_4 (Length: 403)
Name: NF3259_low_4
Description: NF3259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3259_low_4 |
 | |
|
| [»] chr1 (11 HSPs) |
| |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 15040458 - 15040056
Alignment:
| Q |
1 |
ctgttagttgattcgaggacaaatcaagtaaatgtaaattggttgccccaaccaattctagtggtatactccctgttaaattattgttggagattttaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15040458 |
ctgttagttgattcgaggacaaatcaagtaaatgtaaattggttgccccaaccaattctagtggtatactccctgttaaattattgttggagattttaag |
15040359 |
T |
|
| Q |
101 |
gcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaattttattaccactcaattccatgcagtacaagtttggacacacaccaaag |
200 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15040358 |
gcttatgagattcttgcgttttccccaattaggtgaaatatggccaaaatatttattaccactcaattccatgtagtacaagtttggacacacaccaaag |
15040259 |
T |
|
| Q |
201 |
ctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaattggacctgtgaactgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15040258 |
ctatctgttatatttccagcaagttggttttgttcaagtctcactctctttagacttgaacaattcttcaaactctttggaattggacctgtgaactgag |
15040159 |
T |
|
| Q |
301 |
tatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgacctatgaaattattatcacctaactgcagaatcttcaattt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15040158 |
tatttctagccgagaacacagttaactttccactactacatatattgggaggtaaatgacctatgaaattattatcaccaaactgcagaatcttcaattt |
15040059 |
T |
|
| Q |
401 |
gtt |
403 |
Q |
| |
|
||| |
|
|
| T |
15040058 |
gtt |
15040056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 56 - 298
Target Start/End: Complemental strand, 15016762 - 15016520
Alignment:
| Q |
56 |
ttctagtggtatactccctgttaaattattgttggagattttaaggcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaatttta |
155 |
Q |
| |
|
|||| ||||||| || ||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||| || ||||| || ||| | | ||| |
|
|
| T |
15016762 |
ttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaatttgaccatacaaatta |
15016663 |
T |
|
| Q |
156 |
ttaccactcaattccatgcagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagac |
255 |
Q |
| |
|
||| |||||||||||||| ||| |||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||| |||| |||||| || | |
|
|
| T |
15016662 |
ttatcactcaattccatgtagtccaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgttcaagcctcagtctcttaaggc |
15016563 |
T |
|
| Q |
256 |
ttgaacaattcttcaaactctttggaattggacctgtgaactg |
298 |
Q |
| |
|
|||| |||||||||||||||| ||||| | | ||||||||||| |
|
|
| T |
15016562 |
ttgagcaattcttcaaactctctggaactaggcctgtgaactg |
15016520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 56 - 377
Target Start/End: Complemental strand, 15001754 - 15001433
Alignment:
| Q |
56 |
ttctagtggtatactccctgttaaattattgttggagattttaaggcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaatttta |
155 |
Q |
| |
|
|||| ||||||| || ||||| |||||||||||||||||||| |||||| ||||||||||| |||||||||| || |||| ||| ||| ||| ||| |
|
|
| T |
15001754 |
ttctggtggtatgcttcctgtcaaattattgttggagatttttaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaatta |
15001655 |
T |
|
| Q |
156 |
ttaccactcaattccatgcagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagac |
255 |
Q |
| |
|
||| ||||||| |||||| | | ||| |||||| ||||||||||||| |||||||||||||||| ||||||||||||| || |||||||||| | || | |
|
|
| T |
15001654 |
ttatcactcaaatccatgtattccaaatttggatacacaccaaagctgtctgttatatttccagtcagttggttttgttgaagtctcactctcgtaaggc |
15001555 |
T |
|
| Q |
256 |
ttgaacaattcttcaaactctttggaattggacctgtgaactgattatttctagccgagaacacagttaactttccactattacatatattgtgaggtaa |
355 |
Q |
| |
|
|||| |||||||||||||||| ||||| | | ||||||||||| ||| | | | | ||||| ||||||| |||| ||||| |||||||||||||| |
|
|
| T |
15001554 |
ttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtgcaacagtgaacatttttaacttcccaccgttacaaatattgtgaggtaa |
15001455 |
T |
|
| Q |
356 |
atgacctatgaaattattatca |
377 |
Q |
| |
|
|||||| | |||||||||||| |
|
|
| T |
15001454 |
atgaccaacaaaattattatca |
15001433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 63 - 376
Target Start/End: Complemental strand, 14467443 - 14467130
Alignment:
| Q |
63 |
ggtatactccctgttaaattattgttggagattttaaggcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaattttattaccac |
162 |
Q |
| |
|
||||| || ||||||||||| || ||| |||||||||||| | |||||||| || | |||||||||| ||||| | ||||||| | | |||||| ||| |
|
|
| T |
14467443 |
ggtatgcttcctgttaaattgttattgaagattttaaggcatgtgagattcatgcattttccccaattcggtgatagatggccatacaaattattatcac |
14467344 |
T |
|
| Q |
163 |
tcaattccatgcagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaaca |
262 |
Q |
| |
|
||||||||||| ||| ||| |||||| ||| |||||| ||| |||||||| ||| ||||| ||||||| || || ||||| | || || || || |
|
|
| T |
14467343 |
tcaattccatgtagtccaattttggatgcacgccaaaggcatcagttatattgtcagttagttgattttgttgaagccttactctataaaggctagagca |
14467244 |
T |
|
| Q |
263 |
attcttcaaactctttggaattggacctgtgaactgattatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgacct |
362 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||||| || || |||||| |||||||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
14467243 |
gttcttcaaactctttggaattgggcctgtgaattggttattgctggcggagaaccaagttaactttccaccagcacatatgttgtgaggtaaatgacct |
14467144 |
T |
|
| Q |
363 |
atgaaattattatc |
376 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14467143 |
gtgaaattattatc |
14467130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 6 - 295
Target Start/End: Original strand, 14523039 - 14523328
Alignment:
| Q |
6 |
agttgattcgaggacaaatcaagtaaatgtaaattggttgccccaaccaattctagtggtatactccctgttaaattattgttggagattttaaggctta |
105 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||||||| || |||||||| ||||||| || ||| |||||||||| |||||||||||||||||| |
|
|
| T |
14523039 |
agttgatttgaggacaagtcaagtatatgtaaattggttgcttcagccaattctggtggtatgcttcctattaaattattattggagattttaaggcttg |
14523138 |
T |
|
| Q |
106 |
tgagattcttgtgtcttccccaattaggtgaaatatggccaaaaattttattaccactcaattccatgcagtacaagtttggacacacaccaaagctatc |
205 |
Q |
| |
|
| ||||||||| | |||||||| || |||| || ||| ||| |||||| |||| ||||| ||| ||| ||| |||||| |||||||||| ||||| |
|
|
| T |
14523139 |
tcagattcttgcacttcccccaatttggagaaagataaccataaaaattattatcacttaattctatgtagtccaaatttggatacacaccaaaactatc |
14523238 |
T |
|
| Q |
206 |
tgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaattggacctgtgaa |
295 |
Q |
| |
|
|||||||||||| | | || |||||| | || ||||| ||| | || || ||||| ||||||||||||| |||||||||||| ||||| |
|
|
| T |
14523239 |
tgttatatttcctgtcattttgttttggttaagtctcaatcttataaggctagaacagttcttcaaactctctggaattggaccagtgaa |
14523328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 75 - 374
Target Start/End: Original strand, 14533229 - 14533528
Alignment:
| Q |
75 |
gttaaattattgttggagattttaaggcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaattttattaccactcaattccatgc |
174 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||| |||||| | |||||||| ||||| ||||||||| ||| |||||| |||||||||||||| |
|
|
| T |
14533229 |
gttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcactcaattccatgt |
14533328 |
T |
|
| Q |
175 |
agtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaact |
274 |
Q |
| |
|
||| ||| |||||| |||| |||||| ||| |||||||| ||| | ||| ||||||| || ||| ||||| | ||||| || || ||||||||||| |
|
|
| T |
14533329 |
agtccaaatttggatacacgccaaaggcatcagttatattgtcagttatttgattttgttgaagtcttactctgataagactggagcacttcttcaaact |
14533428 |
T |
|
| Q |
275 |
ctttggaattggacctgtgaactgattatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgacctatgaaattatta |
374 |
Q |
| |
|
|||||||||||| |||||||| || ||||| || || |||||| ||||||||||| || | ||| || ||| |||||||||||||| ||||||||||| |
|
|
| T |
14533429 |
ctttggaattgggcctgtgaattggttattgctggcggagaacttagttaactttctaccagcacaaatgttgagaggtaaatgacctgtgaaattatta |
14533528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 56 - 298
Target Start/End: Complemental strand, 15010647 - 15010405
Alignment:
| Q |
56 |
ttctagtggtatactccctgttaaattattgttggagattttaaggcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaatttta |
155 |
Q |
| |
|
|||| ||||||| || |||||||||||||| |||||||| |||||| ||||| ||||| |||||||||| || |||| ||| ||| ||| ||| |
|
|
| T |
15010647 |
ttctggtggtattcttcctgttaaattattaccagagatttttaggcttgtgagaatcttgcactttccccaatttggagaaagatgaccataaaaatta |
15010548 |
T |
|
| Q |
156 |
ttaccactcaattccatgcagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagac |
255 |
Q |
| |
|
||| |||||||||||||| ||| |||||||||| |||||||||| || |||||||||||||||| |||||||||||| |||| |||| |||| | || | |
|
|
| T |
15010547 |
ttatcactcaattccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtaagttggttttgatcaagcctcagtctcgtaaggc |
15010448 |
T |
|
| Q |
256 |
ttgaacaattcttcaaactctttggaattggacctgtgaactg |
298 |
Q |
| |
|
|||| |||||||||||||||| ||||| | | ||||||||||| |
|
|
| T |
15010447 |
ttgagcaattcttcaaactctctggaactaggcctgtgaactg |
15010405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 52 - 377
Target Start/End: Complemental strand, 14503633 - 14503308
Alignment:
| Q |
52 |
ccaattctagtggtatactccctgttaaattattgttggagattttaaggcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaat |
151 |
Q |
| |
|
|||||||| |||||||| | ||||||||||| || |||||||||||||||||| ||||| ||||| |||||||||| ||||| | ||||||| | | |
|
|
| T |
14503633 |
ccaattcttgtggtatatttcctgttaaattgttattggagattttaaggcttgtgagactcttgcactttccccaatttggtgatagatggccatacaa |
14503534 |
T |
|
| Q |
152 |
tttattaccactcaattccatgcagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctcttt |
251 |
Q |
| |
|
||||| |||||||||||||| ||| ||| | |||| | |||||||| | ||||||||||||||||| | ||| |||| || || || ||||| | |
|
|
| T |
14503533 |
attattttcactcaattccatgtagtccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaata |
14503434 |
T |
|
| Q |
252 |
agacttgaacaattcttcaaactctttggaattggacctgtgaactgattatttctagccgagaacacagttaactttccactattacatatattgtgag |
351 |
Q |
| |
|
|| || || |||||||| ||||||||||||||||| |||||||| || ||||| ||||| | ||| || ||| |||||| | ||| || ||||||| |
|
|
| T |
14503433 |
aggctggagcaattctttaaactctttggaattggccctgtgaattggttattactagcagtgaaatttgtcaacattccaccaacacaaatgttgtgag |
14503334 |
T |
|
| Q |
352 |
gtaaatgacctatgaaattattatca |
377 |
Q |
| |
|
||||||| |||||||||||||||||| |
|
|
| T |
14503333 |
gtaaatggcctatgaaattattatca |
14503308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 61 - 282
Target Start/End: Complemental strand, 15024759 - 15024538
Alignment:
| Q |
61 |
gtggtatactccctgttaaattattgttggagattttaaggcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaattttattacc |
160 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||||||||| ||||||||||| |||||||||| || |||| ||| ||| ||| |||||| | |
|
|
| T |
15024759 |
gtggtattcttcctgttaaattattaccagagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatc |
15024660 |
T |
|
| Q |
161 |
actcaattccatgcagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaa |
260 |
Q |
| |
|
| |||| |||||| |||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||| |||| |||||||| || || ||| | |
|
|
| T |
15024659 |
attcaagtccatgtagtacaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaag |
15024560 |
T |
|
| Q |
261 |
caattcttcaaactctttggaa |
282 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
15024559 |
caattcttcaaactctctggaa |
15024538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 61 - 282
Target Start/End: Complemental strand, 15032100 - 15031879
Alignment:
| Q |
61 |
gtggtatactccctgttaaattattgttggagattttaaggcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaattttattacc |
160 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||||||||| ||||||||||| |||||||||| || |||| ||| ||| ||| |||||| | |
|
|
| T |
15032100 |
gtggtattcttcctgttaaattattaccagagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatc |
15032001 |
T |
|
| Q |
161 |
actcaattccatgcagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaa |
260 |
Q |
| |
|
| |||| |||||| |||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||| |||| |||||||| || || ||| | |
|
|
| T |
15032000 |
attcaagtccatgtagtacaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaag |
15031901 |
T |
|
| Q |
261 |
caattcttcaaactctttggaa |
282 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
15031900 |
caattcttcaaactctctggaa |
15031879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 56 - 282
Target Start/End: Complemental strand, 15036667 - 15036441
Alignment:
| Q |
56 |
ttctagtggtatactccctgttaaattattgttggagattttaaggcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaatttta |
155 |
Q |
| |
|
|||| ||||||| || || ||||||||||| ||||||||| |||||| ||||||||||| |||||||||| || |||| ||| ||| ||| ||| |
|
|
| T |
15036667 |
ttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaatta |
15036568 |
T |
|
| Q |
156 |
ttaccactcaattccatgcagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagac |
255 |
Q |
| |
|
||| ||||||| |||||| ||| |||||||||| |||||||||| || |||||||||||||||| ||||||||||| | || |||| ||||| || | |
|
|
| T |
15036567 |
ttatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttggttaagcctcaatctctcaaggc |
15036468 |
T |
|
| Q |
256 |
ttgaacaattcttcaaactctttggaa |
282 |
Q |
| |
|
|||| |||||||||||||||| ||||| |
|
|
| T |
15036467 |
ttgagcaattcttcaaactctctggaa |
15036441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 6193 - 5819
Alignment:
| Q |
1 |
ctgttagttgattcgaggacaaatcaagtaaatgtaaattggttgccccaaccaattctagtggtatactccctgttaaattattgttggagattttaag |
100 |
Q |
| |
|
|||| |||||||||||||| | || |||| | |||||||||||| | ||||||| ||||||| || |||| || |||||| ||| | | |||||| |
|
|
| T |
6193 |
ctgtgagttgattcgaggaaaggtccagtatagttaaattggttgcttcggccaattcgggtggtatgcttcctgatatattattattgaaaactttaag |
6094 |
T |
|
| Q |
101 |
gcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaattttattaccactcaattccatgcagtacaagtttggacacacaccaaag |
200 |
Q |
| |
|
|||| ||||||||||| |||||||||| || || | ||| ||| ||| |||||| ||||||||||||| | | ||| || ||| ||||||||||| |
|
|
| T |
6093 |
gcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacaccaaag |
5994 |
T |
|
| Q |
201 |
ctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaattggacctgtgaactgat |
300 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| || |||||||||||| || ||||| ||||| || ||||||||||||| | |||| ||||||| | |
|
|
| T |
5993 |
ctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaattttttaaactctttggaactagaccaatgaactggt |
5894 |
T |
|
| Q |
301 |
tatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgacctatgaaattattat |
375 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5893 |
tattactagtggagaaacgagttaactttccactaacacatatattgtgaggtaaatgacctgtgaaattattat |
5819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 383
Target Start/End: Complemental strand, 12407 - 12099
Alignment:
| Q |
75 |
gttaaattattgttggagattttaaggcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaattttattaccactcaattccatgc |
174 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||| |||||| | |||||||| ||||| ||||||||| ||| |||||| |||| ||||||||| |
|
|
| T |
12407 |
gttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgt |
12308 |
T |
|
| Q |
175 |
agtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaact |
274 |
Q |
| |
|
|| ||| | |||| | |||||||| | ||||||||||||||||| | ||| |||| || || || ||||| | || || || |||||||||||||| |
|
|
| T |
12307 |
agaccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattcttcaaact |
12208 |
T |
|
| Q |
275 |
ctttggaattggacctgtgaactgattatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgacctatgaaattatta |
374 |
Q |
| |
|
| |||||| | |||||||| |||||||| || | |||| | ||||||||||||| ||| || ||||| ||||| |||||| ||||||||||| |
|
|
| T |
12207 |
cattggaactaatcctgtgaaatgattattggatgcagtgaaccaatataactttccactaacacaaatgttgtgcggtaattgacctgtgaaattatta |
12108 |
T |
|
| Q |
375 |
tcacctaac |
383 |
Q |
| |
|
||||||||| |
|
|
| T |
12107 |
tcacctaac |
12099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 6837 - 6463
Alignment:
| Q |
1 |
ctgttagttgattcgaggacaaatcaagtaaatgtaaattggttgccccaaccaattctagtggtatactccctgttaaattattgttggagattttaag |
100 |
Q |
| |
|
|||| |||||||||||||| | || |||| | |||||||||||| | ||||||| ||||||| || |||| || |||||| ||| | | |||||| |
|
|
| T |
6837 |
ctgtgagttgattcgaggaaaggtccagtatagttaaattggttgcttcggccaattcgggtggtatgcttcctgatatattattattgaaaactttaag |
6738 |
T |
|
| Q |
101 |
gcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaattttattaccactcaattccatgcagtacaagtttggacacacaccaaag |
200 |
Q |
| |
|
|||| ||||||||||| |||||||||| || || | ||| ||| ||| |||||| ||||||||||||| | | ||| || ||| ||||||||||| |
|
|
| T |
6737 |
gcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacaccaaag |
6638 |
T |
|
| Q |
201 |
ctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaattggacctgtgaactgat |
300 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| || |||||||||||| || ||||| ||||| || ||||||||||||| | |||| ||||||| | |
|
|
| T |
6637 |
ctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaattttttaaactctttggaactagaccaatgaactggt |
6538 |
T |
|
| Q |
301 |
tatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgacctatgaaattattat |
375 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6537 |
tattactagtggagaaacgagttaactttccactaacacatatattgtgaggtaaatgacctgtgaaattattat |
6463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 383
Target Start/End: Complemental strand, 13050 - 12742
Alignment:
| Q |
75 |
gttaaattattgttggagattttaaggcttatgagattcttgtgtcttccccaattaggtgaaatatggccaaaaattttattaccactcaattccatgc |
174 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||| |||||| | |||||||| ||||| ||||||||| ||| |||||| |||| ||||||||| |
|
|
| T |
13050 |
gttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgt |
12951 |
T |
|
| Q |
175 |
agtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaact |
274 |
Q |
| |
|
|| ||| | |||| | |||||||| | ||||||||||||||||| | ||| |||| || || || ||||| | || || || |||||||||||||| |
|
|
| T |
12950 |
agaccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattcttcaaact |
12851 |
T |
|
| Q |
275 |
ctttggaattggacctgtgaactgattatttctagccgagaacacagttaactttccactattacatatattgtgaggtaaatgacctatgaaattatta |
374 |
Q |
| |
|
| |||||| | |||||||| |||||||| || | |||| | ||||||||||||| ||| || ||||| ||||| |||||| ||||||||||| |
|
|
| T |
12850 |
cattggaactaatcctgtgaaatgattattggatgcagtgaaccaatataactttccactaacacaaatgttgtgcggtaattgacctgtgaaattatta |
12751 |
T |
|
| Q |
375 |
tcacctaac |
383 |
Q |
| |
|
||||||||| |
|
|
| T |
12750 |
tcacctaac |
12742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 17848044 - 17847997
Alignment:
| Q |
190 |
acacaccaaagctatctgttatatttccagcaagttggttttgttcaa |
237 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17848044 |
acacaccaaagaaatctgttatatttccagaaagttggttttgttcaa |
17847997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 14605397 - 14605297
Alignment:
| Q |
204 |
tctgttatatttccagcaagttggttttgttcaattctcactctctttagacttgaacaattcttcaaactctttggaattggacctgtgaactgattat |
303 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| | || | | || || |||||||||||||||||||||| || |||||||| || |||| |
|
|
| T |
14605397 |
tctgttatatttccagtaagttggttttgttcaagtctaatcctaataatgctagagcaattcttcaaactctttggaactgagcctgtgaagtggttat |
14605298 |
T |
|
| Q |
304 |
t |
304 |
Q |
| |
|
| |
|
|
| T |
14605297 |
t |
14605297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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