View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3260_high_1_N (Length: 428)
Name: NF3260_high_1_N
Description: NF3260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3260_high_1_N |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 34899975 - 34899746
Alignment:
| Q |
30 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
129 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
34899876 |
T |
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| Q |
130 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899875 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt |
34899776 |
T |
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| Q |
230 |
atgtgaatttgtgcagatgatatcactgac |
259 |
Q |
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| T |
34899775 |
atgtgaatttgtgcagatgatatcactgac |
34899746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 312 - 428
Target Start/End: Original strand, 29465158 - 29465267
Alignment:
| Q |
312 |
gtcagtggatatttccttagctgtaacagttaggatgccattttcatcaacggaaattggaaaagcatacctccaagggctggccacggggacatggaag |
411 |
Q |
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| T |
29465158 |
gtcagtagatatttccttagcagtaacagttaggatgccattttcatcaa-------tggaaaagcatacctccaagggctggccacggggacatggaag |
29465250 |
T |
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| Q |
412 |
acaaggaatcccaaatg |
428 |
Q |
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| T |
29465251 |
acaaggagtcccaaatg |
29465267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 428
Target Start/End: Original strand, 8666729 - 8666834
Alignment:
| Q |
316 |
gtggatatttccttagctgtaacagttaggatgccattttcatcaacggaaattggaaaagcatacctccaagggctggccacggggacatggaagacaa |
415 |
Q |
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|||||||||||| |||| |||||||| ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8666729 |
gtggatatttccctagcagtaacagtcaggataccattttcatcaa-------ttgaaaagcatacctccaagggctggccacggggacctggaagacaa |
8666821 |
T |
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| Q |
416 |
ggaatcccaaatg |
428 |
Q |
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| T |
8666822 |
cgaagcccaaatg |
8666834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 319 - 404
Target Start/End: Complemental strand, 10495226 - 10495148
Alignment:
| Q |
319 |
gatatttccttagctgtaacagttaggatgccattttcatcaacggaaattggaaaagcatacctccaagggctggccacggggac |
404 |
Q |
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| T |
10495226 |
gatatatccttagcagtaacagtcaggatgccattttcatcaa-------tggaaaagcatacctccaagggctggccacgaggac |
10495148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 410
Target Start/End: Complemental strand, 13334220 - 13334136
Alignment:
| Q |
319 |
gatatttccttagctgtaacagttaggatgccattttcatcaacggaaattggaaaagcatacctccaagggctggccacggggacatggaa |
410 |
Q |
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| T |
13334220 |
gatatatccttagcagtaaccgtcaggatgccattttcatcaa-------tggaaaagcatacctccaagggctgaccacgcggacctggaa |
13334136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 416
Target Start/End: Original strand, 8653803 - 8653850
Alignment:
| Q |
369 |
tggaaaagcatacctccaagggctggccacggggacatggaagacaag |
416 |
Q |
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| T |
8653803 |
tggaaaagcatacctccaagggctgaccacggggacctggaaggcaag |
8653850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 428
Target Start/End: Complemental strand, 9336746 - 9336644
Alignment:
| Q |
319 |
gatatttccttagctgtaacagttaggatgccattttcatcaacggaaattggaaaagcatacctccaagggctggccacggggacatggaagacaagga |
418 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||| | |||||||| |||||||||| |||||||||||| |||||||||| || |
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| T |
9336746 |
gatatttccctagcagtaacagttaggatgccattttcatcaa-------tcgaaaagcaggcctccaagggatggccacggggagctggaagacaatga |
9336654 |
T |
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| Q |
419 |
atcccaaatg |
428 |
Q |
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| T |
9336653 |
agccgaaatg |
9336644 |
T |
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