View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3260_low_3 (Length: 211)
Name: NF3260_low_3
Description: NF3260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3260_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 46014081 - 46013899
Alignment:
| Q |
12 |
atcatcaaccaaaccaaccactagcaactaacaatggcaatggagattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttcta |
111 |
Q |
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| T |
46014081 |
atcatcaaccaaaccaaccactagcaactaacaatggcaatggagattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttcta |
46013982 |
T |
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| Q |
112 |
ccttacctcacacaatcaccaccttctcaaaacctcaacttagacgcatatcattaccaacatcaaccaccatttcactactt |
194 |
Q |
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| T |
46013981 |
ccttacctcacacaatcaccactttctcaaaacctcaacttagacgcatatcattaccaacatcaaccaccatttcactactt |
46013899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 39 - 194
Target Start/End: Original strand, 46246534 - 46246689
Alignment:
| Q |
39 |
ctaacaatggcaatggagattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccaccttct |
138 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46246534 |
ctaacaatggcgatggagattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccactttct |
46246633 |
T |
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| Q |
139 |
caaaacctcaacttagacgcatatcattaccaacatcaaccaccatttcactactt |
194 |
Q |
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| T |
46246634 |
caaaacctcaacttagacgcatatcattaccaacatcaaccaccatttcactactt |
46246689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 41 - 194
Target Start/End: Complemental strand, 46020403 - 46020250
Alignment:
| Q |
41 |
aacaatggcaatggagattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccaccttctca |
140 |
Q |
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| T |
46020403 |
aacaatggcgatggagattgcagctatggcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccaccttctca |
46020304 |
T |
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| Q |
141 |
aaacctcaacttagacgcatatcattaccaacatcaaccaccatttcactactt |
194 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46020303 |
aaacctcaacttagacgcatatcgttaccaacatcaaccaccatttcactactt |
46020250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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