View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3261_high_3 (Length: 350)

Name: NF3261_high_3
Description: NF3261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3261_high_3
NF3261_high_3
[»] chr7 (3 HSPs)
chr7 (1-126)||(9568749-9568874)
chr7 (215-338)||(9569014-9569138)
chr7 (243-320)||(36066327-36066404)
[»] chr8 (2 HSPs)
chr8 (232-295)||(43820403-43820466)
chr8 (248-320)||(6144755-6144827)
[»] chr3 (2 HSPs)
chr3 (232-295)||(1604518-1604581)
chr3 (232-318)||(10505722-10505807)
[»] chr1 (3 HSPs)
chr1 (66-120)||(11016243-11016298)
chr1 (232-295)||(11016467-11016530)
chr1 (66-120)||(36683470-36683525)
[»] chr4 (3 HSPs)
chr4 (66-120)||(42476961-42477016)
chr4 (247-320)||(26841764-26841837)
chr4 (88-120)||(6025414-6025446)
[»] chr6 (1 HSPs)
chr6 (76-120)||(21060155-21060200)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 9568749 - 9568874
Alignment:
Q  1 ctccactagtggccacaaaatcaccacatgtagcaagtccaaaaataaaatctaccaaaacttaatttactttatgaacaaatatactctggatcttatc 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  9568749 ctccactagtggccacaaaattaccacatgtagcaagtccaaaaataaaatttaccaaaacttaatttactttatgaacaaatatattctggatcttatc 9568848  T
Q  101 aaatgattgatatttcatttgtctaa 126  Q
    ||||||||||||||||||||||||||    
T  9568849 aaatgattgatatttcatttgtctaa 9568874  T

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Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 215 - 338
Target Start/End: Original strand, 9569014 - 9569138
Alignment:
Q  215 ttcttccaattatgctatttaatttttcgattctcaactttatatttaatactaactacaacataaattttgttttatataatattatttattttggtag 314  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9569014 ttcttccaattatgctatttaattttttgattctcaactttatatttaatactaactacaacataaattttgttttatataatattatttattttggtgg 9569113  T
Q  315 ccca-ccgaaaaatattcagatatt 338  Q
    |||| |||||||||||| |||||||    
T  9569114 cccacccgaaaaatatttagatatt 9569138  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 36066404 - 36066327
Alignment:
Q  243 gattctcaactttatatttaatactaactacaacataaattttgttttatataatattatttattttggtagcccacc 320  Q
    |||| |||||||||| |||||| |  ||||||||| |||||||||||||||||  ||  ||||||||||| |||||||    
T  36066404 gattttcaactttatgtttaatgcacactacaacacaaattttgttttatatatcatagtttattttggtggcccacc 36066327  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 43820403 - 43820466
Alignment:
Q  232 tttaatttttcgattctcaactttatatttaatactaactacaacataaattttgttttatata 295  Q
    |||||||||| |||| | ||||||||||||||| |  |||||||| ||||||||||||||||||    
T  43820403 tttaattttttgatttttaactttatatttaatgcacactacaacgtaaattttgttttatata 43820466  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 6144755 - 6144827
Alignment:
Q  248 tcaactttatatttaatactaactacaacataaattttgttttatataatattatttattttggtagcccacc 320  Q
    |||||||||||||||| ||  ||||||||||||||||| |||||||||  ||  || |||||||| |||||||    
T  6144755 tcaactttatatttaacacacactacaacataaattttattttatatatcatagttcattttggtggcccacc 6144827  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 1604518 - 1604581
Alignment:
Q  232 tttaatttttcgattctcaactttatatttaatactaactacaacataaattttgttttatata 295  Q
    |||||||||| |||| |||||||||| |||||| |  |||||||||| ||||||||||||||||    
T  1604518 tttaattttttgattttcaactttatgtttaatgcacactacaacatgaattttgttttatata 1604581  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 318
Target Start/End: Complemental strand, 10505807 - 10505722
Alignment:
Q  232 tttaatttttcgattctcaactttatatttaatactaactacaacataaattttgttttatataatattatttattttggtagccca 318  Q
    ||||||||||  ||| |||||||||| |||||| |  |||| ||||||||||||||||| |||| |||  || ||||||||||||||    
T  10505807 tttaattttttaattttcaactttatgtttaatgcacacta-aacataaattttgttttttatattatagttcattttggtagccca 10505722  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 11016243 - 11016298
Alignment:
Q  66 tttactttatgaacaaatatactct-ggatcttatcaaatgattgatatttcattt 120  Q
    ||||||||| ||||||||||||| | |||||| |||||||||||||||||||||||    
T  11016243 tttactttaagaacaaatatacttttggatctcatcaaatgattgatatttcattt 11016298  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 11016467 - 11016530
Alignment:
Q  232 tttaatttttcgattctcaactttatatttaatactaactacaacataaattttgttttatata 295  Q
    |||||||||| |||| |||||||||| |||||| |  ||||||||||||| |||||||||||||    
T  11016467 tttaattttttgattttcaactttatgtttaatgcacactacaacataaaatttgttttatata 11016530  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 36683525 - 36683470
Alignment:
Q  66 tttactttatgaacaaatatactct-ggatcttatcaaatgattgatatttcattt 120  Q
    ||||||||| ||||||||||||| | |||||| |||||||||||||||||||||||    
T  36683525 tttactttaagaacaaatatacttttggatctcatcaaatgattgatatttcattt 36683470  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 42477016 - 42476961
Alignment:
Q  66 tttactttatgaacaaatatac-tctggatcttatcaaatgattgatatttcattt 120  Q
    ||||||||| |||||||||||  | ||||||| |||||||||||||||||||||||    
T  42477016 tttactttaagaacaaatatatatttggatctcatcaaatgattgatatttcattt 42476961  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 26841837 - 26841764
Alignment:
Q  247 ctcaactttatatttaatactaactacaacataaattttgttttatataatattatttattttggtagcccacc 320  Q
    ||||||||||| ||||||| |||| ||||||| ||||||||| ||||||  ||  |||| |||||| |||||||    
T  26841837 ctcaactttatgtttaatattaacaacaacattaattttgttctatatatcatagtttactttggtggcccacc 26841764  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 6025414 - 6025446
Alignment:
Q  88 tctggatcttatcaaatgattgatatttcattt 120  Q
    ||||||||| |||||||||||||||||||||||    
T  6025414 tctggatctcatcaaatgattgatatttcattt 6025446  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 21060155 - 21060200
Alignment:
Q  76 gaacaaatatactct-ggatcttatcaaatgattgatatttcattt 120  Q
    ||||||||||||| | |||||| |||||||||||||||||||||||    
T  21060155 gaacaaatatacttttggatctcatcaaatgattgatatttcattt 21060200  T

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