View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3261_high_4 (Length: 345)
Name: NF3261_high_4
Description: NF3261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3261_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 1180735 - 1180547
Alignment:
| Q |
16 |
gtttttgctattggaataaattttggctattttnnnnnnngttcaattcactctttgatatatagatatgattatgatacctgccatgtatcaaagaaaa |
115 |
Q |
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| T |
1180735 |
gtttttgctattggaataaattttggctattttaaaaaaaaatcaattcactctttgatatatagatatgattatgatacctgccatgtatcaaagaaaa |
1180636 |
T |
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| Q |
116 |
ggaaatggattatagatctgattatgtagcaaatggataatataagttttaattttgatgttgccatccataactgatgtagaaggtaa |
204 |
Q |
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| T |
1180635 |
ggaaatggattatagatctgattatgtagcaaatggataatataagttttaattttgatgttgccatccatagttgatgtagaaggtaa |
1180547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 1180512 - 1180434
Alignment:
| Q |
233 |
tagaacttctctcgtctttcttcgcaagtttgaaggaaaaagcaaaagcgtgggacccacaccaatttagcatctctcg |
311 |
Q |
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| T |
1180512 |
tagaacttctctcgtctttcttcgaaagtttgaagggaaaagcaaaagcgtgggacccacaccaatttagcatctctcg |
1180434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 1156557 - 1156403
Alignment:
| Q |
16 |
gtttttgctattggaataaattttggctattttnnnnnnngttcaattcactctttgatatatagatatgattatgatacctgccatgtatcaaagaaaa |
115 |
Q |
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| T |
1156557 |
gtttttgctattggaataaattttggctattttaaaaaaagttcaattcactctttgatatatagatatgattatgatacttgccatgtatcaaagaaaa |
1156458 |
T |
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| Q |
116 |
ggaaatggattatagatctgattatgtagcaaatggataatataagttttaattt |
170 |
Q |
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| T |
1156457 |
ggaaatggattatagatctgattatgtagcaaatgaataatataagttttaattt |
1156403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 233 - 320
Target Start/End: Complemental strand, 1155892 - 1155805
Alignment:
| Q |
233 |
tagaacttctctcgtctttcttcgcaagtttgaaggaaaaagcaaaagcgtgggacccacaccaatttagcatctctcgcctatttct |
320 |
Q |
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| T |
1155892 |
tagaacttctctcgtctttcttcgcaagtttgaagggaaaagcaaaagcgtgggacccacaccaatttagcatctctcgcctatttct |
1155805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 1155963 - 1155917
Alignment:
| Q |
162 |
ttttaattttgatgttgccatccataactgatgtagaaggtaaaggt |
208 |
Q |
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| T |
1155963 |
ttttaattttgatgttgccatccatagctgatgtagaaggtaagggt |
1155917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 50365689 - 50365612
Alignment:
| Q |
233 |
tagaacttctctcgtctttcttcgcaagtttgaaggaaaaagcaaaagcgtgggacccacaccaatttagcatctctc |
310 |
Q |
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|||| |||||||||||||||||| ||| |||| || || | |||||||||||||||||||||| | ||| |||||| |
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| T |
50365689 |
tagagcttctctcgtctttcttctcaattttggagagaagataaaaagcgtgggacccacaccaaataagcctctctc |
50365612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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