View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3261_low_1 (Length: 645)

Name: NF3261_low_1
Description: NF3261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3261_low_1
NF3261_low_1
[»] chr6 (14 HSPs)
chr6 (3-631)||(24192639-24193263)
chr6 (191-631)||(24191542-24191978)
chr6 (501-549)||(1072347-1072395)
chr6 (499-550)||(15541630-15541681)
chr6 (501-550)||(15533171-15533220)
chr6 (501-549)||(15530613-15530661)
chr6 (501-549)||(8995255-8995303)
chr6 (501-549)||(9019702-9019750)
chr6 (501-549)||(30729298-30729346)
chr6 (586-631)||(11983373-11983418)
chr6 (586-631)||(14507519-14507564)
chr6 (586-631)||(15541484-15541529)
chr6 (586-631)||(30729172-30729217)
chr6 (501-549)||(19227900-19227948)
[»] chr5 (23 HSPs)
chr5 (501-549)||(659713-659761)
chr5 (499-547)||(20507955-20508003)
chr5 (501-549)||(21947770-21947818)
chr5 (501-547)||(20504406-20504452)
chr5 (501-540)||(661247-661286)
chr5 (501-569)||(31466428-31466496)
chr5 (499-549)||(2818798-2818849)
chr5 (501-540)||(12556402-12556441)
chr5 (499-549)||(16775895-16775945)
chr5 (498-570)||(2174677-2174749)
chr5 (586-631)||(2174809-2174854)
chr5 (582-631)||(16776043-16776092)
chr5 (586-631)||(21947917-21947962)
chr5 (586-631)||(39797978-39798023)
chr5 (501-550)||(31179884-31179933)
chr5 (501-547)||(38881845-38881891)
chr5 (503-548)||(6756257-6756302)
chr5 (586-631)||(21684805-21684850)
chr5 (501-549)||(21684921-21684969)
chr5 (586-631)||(25921817-25921862)
chr5 (501-549)||(25921944-25921992)
chr5 (501-549)||(34479924-34479972)
chr5 (586-631)||(38881995-38882040)
[»] chr2 (17 HSPs)
chr2 (501-549)||(40032538-40032586)
chr2 (504-549)||(6259306-6259351)
chr2 (533-631)||(13910388-13910482)
chr2 (501-549)||(21521186-21521234)
chr2 (586-631)||(6264489-6264534)
chr2 (586-631)||(42064381-42064426)
chr2 (591-631)||(18800646-18800686)
chr2 (501-545)||(18800775-18800819)
chr2 (499-547)||(22407902-22407950)
chr2 (506-549)||(6264615-6264658)
chr2 (500-547)||(42064230-42064277)
chr2 (586-631)||(19504689-19504734)
chr2 (507-540)||(28462805-28462838)
chr2 (587-631)||(6259159-6259203)
chr2 (533-627)||(21521043-21521133)
chr2 (591-631)||(27104670-27104710)
chr2 (499-543)||(35107016-35107060)
[»] chr3 (29 HSPs)
chr3 (501-548)||(32218836-32218883)
chr3 (500-549)||(48362138-48362187)
chr3 (501-549)||(32264532-32264580)
chr3 (501-550)||(45882659-45882708)
chr3 (501-549)||(26720268-26720316)
chr3 (500-547)||(18162404-18162451)
chr3 (586-631)||(1321311-1321356)
chr3 (586-631)||(5191523-5191568)
chr3 (586-631)||(10084735-10084780)
chr3 (586-631)||(11170274-11170319)
chr3 (500-545)||(24176998-24177043)
chr3 (586-631)||(26720418-26720463)
chr3 (586-631)||(46966977-46967022)
chr3 (501-540)||(10956524-10956563)
chr3 (501-547)||(1321161-1321207)
chr3 (501-547)||(11162891-11162937)
chr3 (501-550)||(25388618-25388667)
chr3 (586-631)||(5522957-5523002)
chr3 (501-549)||(7606915-7606963)
chr3 (586-631)||(10191655-10191700)
chr3 (586-631)||(11163020-11163065)
chr3 (501-549)||(18097374-18097422)
chr3 (501-549)||(18099659-18099707)
chr3 (586-631)||(18162534-18162579)
chr3 (586-631)||(22114647-22114692)
chr3 (586-631)||(24979577-24979622)
chr3 (586-631)||(32264385-32264430)
chr3 (501-545)||(11170145-11170189)
chr3 (500-547)||(53896708-53896755)
[»] chr7 (13 HSPs)
chr7 (501-629)||(22392292-22392416)
chr7 (500-547)||(18567362-18567409)
chr7 (500-547)||(31435540-31435587)
chr7 (499-550)||(42006314-42006365)
chr7 (585-631)||(45366445-45366491)
chr7 (588-631)||(44466-44509)
chr7 (501-547)||(35379-35425)
chr7 (501-547)||(44314-44360)
chr7 (501-547)||(1049767-1049813)
chr7 (581-631)||(27306573-27306623)
chr7 (586-631)||(1049639-1049684)
chr7 (501-549)||(40837213-40837261)
chr7 (501-549)||(27306720-27306767)
[»] chr4 (30 HSPs)
chr4 (586-631)||(51015190-51015235)
chr4 (501-549)||(48486113-48486161)
chr4 (501-549)||(36920078-36920125)
chr4 (501-547)||(16631068-16631114)
chr4 (586-631)||(5198364-5198409)
chr4 (501-534)||(9174651-9174684)
chr4 (586-631)||(11434899-11434944)
chr4 (501-570)||(22044861-22044930)
chr4 (586-631)||(24888740-24888785)
chr4 (586-631)||(31849943-31849988)
chr4 (586-631)||(38409143-38409188)
chr4 (501-549)||(36921986-36922033)
chr4 (586-629)||(8756596-8756639)
chr4 (506-549)||(52942959-52943002)
chr4 (501-547)||(16638549-16638595)
chr4 (503-545)||(40091910-40091952)
chr4 (586-631)||(3824917-3824962)
chr4 (501-549)||(3825064-3825112)
chr4 (501-549)||(7941133-7941181)
chr4 (586-631)||(7941263-7941308)
chr4 (582-631)||(24878929-24878978)
chr4 (586-631)||(37089718-37089763)
chr4 (586-631)||(48486263-48486308)
chr4 (586-631)||(52942791-52942836)
chr4 (499-534)||(9177001-9177037)
chr4 (591-631)||(22044734-22044773)
chr4 (591-631)||(22047029-22047068)
chr4 (501-529)||(24878796-24878824)
chr4 (533-631)||(36921839-36921933)
chr4 (502-550)||(47274522-47274570)
[»] chr1 (23 HSPs)
chr1 (501-549)||(14098462-14098510)
chr1 (501-549)||(39462258-39462306)
chr1 (501-547)||(41646681-41646727)
chr1 (501-550)||(13461343-13461392)
chr1 (506-547)||(28207540-28207581)
chr1 (501-549)||(15823286-15823334)
chr1 (503-549)||(38925950-38925996)
chr1 (586-631)||(28840568-28840613)
chr1 (501-549)||(28840418-28840466)
chr1 (533-631)||(28842334-28842428)
chr1 (501-549)||(47451405-47451453)
chr1 (501-549)||(49687301-49687349)
chr1 (501-547)||(3580113-3580159)
chr1 (501-549)||(6822775-6822823)
chr1 (501-549)||(13761577-13761625)
chr1 (586-631)||(13761727-13761772)
chr1 (586-631)||(20302349-20302394)
chr1 (586-631)||(41646810-41646855)
chr1 (586-631)||(51749929-51749974)
chr1 (501-549)||(51752104-51752152)
chr1 (501-537)||(28201911-28201947)
chr1 (501-549)||(28842233-28842281)
chr1 (591-631)||(30790740-30790780)
[»] chr8 (12 HSPs)
chr8 (501-549)||(12517517-12517565)
chr8 (501-549)||(15072506-15072554)
chr8 (501-547)||(27826782-27826828)
chr8 (501-547)||(27829093-27829139)
chr8 (533-631)||(15072607-15072701)
chr8 (533-631)||(27826883-27826977)
chr8 (533-631)||(27829194-27829288)
chr8 (505-549)||(28252078-28252122)
chr8 (586-628)||(2468445-2468487)
chr8 (594-631)||(4423972-4424009)
chr8 (586-631)||(12517370-12517415)
chr8 (533-631)||(15067878-15067972)
[»] scaffold0131 (2 HSPs)
scaffold0131 (586-631)||(14918-14963)
scaffold0131 (502-547)||(14768-14814)
[»] scaffold0127 (1 HSPs)
scaffold0127 (499-548)||(13007-13056)
[»] scaffold0068 (2 HSPs)
scaffold0068 (501-549)||(28941-28989)
scaffold0068 (586-631)||(29060-29105)
[»] scaffold0339 (1 HSPs)
scaffold0339 (502-550)||(3747-3795)
[»] scaffold0250 (1 HSPs)
scaffold0250 (533-631)||(2730-2824)


Alignment Details
Target: chr6 (Bit Score: 527; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 3 - 631
Target Start/End: Complemental strand, 24193263 - 24192639
Alignment:
Q  3 gatgtcgaagaatatccaaaagaatacaaacatttcaatcaagaatagacaacttgtttaatattcaaaatggaaccttcactgctaacaccaaggacaa 102  Q
    |||||| | ||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24193263 gatgtccatgaataaccagaagaatacaaacatttcaatcaagaatagacaacttgtttgatattcaaaatggaaccttcactgctaacaccaaggacaa 24193164  T
Q  103 ccaaaggagaagttcaatacaatggttgtagagttacaagaatatgaagcttggagttctaatggtgaaggttgtgatgaggagtaaagttcataattat 202  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24193163 acaaaggagaagttcaatacaatggttgtagagttacaagaatatgaagcttggagttctaatggtgaaggttgtgatgaggagtaaagttcatagttat 24193064  T
Q  203 gaaagctgtttggtttcatgtcttgtgagaataaacatgagtttatggtgtacccttaaagaagatccaatttcaagaaaagaaatttgaaggggatagt 302  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24193063 gaaagctggttggtttcatgtcttgtgagaataaacatgagtttatggtgtacccttaaagaagatccaatttcaagaaaagaaatttgaaggggatagt 24192964  T
Q  303 ttgatgcatccaatcacaaaggaatcaataaagaaagataagaaggaagaaggtcagagtattatcactgtaataaaatttcattccacaatacctaaat 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24192963 ttgatgcatccaatcacaaaggaatcaataaagaaagataagaaggaagaaggtcagagtattatcactttaataaaatttcattccacaatacctaaat 24192864  T
Q  403 caacaaaggtaagagattttggaatggtgattaatatccatttatggtgtaaactttgaaaagacaatttttgatccgagattaaatatgaaggagagtg 502  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24192863 caacaacggtaagagattttggaatggtgattaatatccatttatggtgtaaactttgaaaagacaatttttgatccgagattaaatatgaaggagagtg 24192764  T
Q  503 tgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacata 602  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||| || |||||| |||| ||| ||||| |||||||   |||||||||||||||||    
T  24192763 tgagagttaacttaaaatcaggttttacagaaatcgtgccacgatgggattgcaatgtggcatgat-ggggcgctggcag---cgaataacagaaacata 24192668  T
Q  603 tttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||| |||||| |||||||||    
T  24192667 tttttcagtgcaaatttgttccaaatttt 24192639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 191 - 631
Target Start/End: Complemental strand, 24191978 - 24191542
Alignment:
Q  191 gttcataattatgaaagctgtttggtttcatgtcttgtgagaataaacatgagtttatggtgtacccttaaagaagatccaatttcaagaaaagaaattt 290  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24191978 gttcatagttatgaaagctggttggtttcatgtcttgtgagaataaacatgagtttatggtgtacccttaaagaagatccaatttcaagaaaagaaattt 24191879  T
Q  291 gaaggggatagtttgatgcatccaatcacaaaggaatcaataaagaaagataagaaggaagaaggtcagagtattatcactgtaataaaatttcattcca 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24191878 gaaggggatagtttgatgcatccaatcacaaaggaatcaataaagaaagataagaaggaagaaggtcagagtattatcactttaataaaatttcattcca 24191779  T
Q  391 caatacctaaatcaacaaaggtaagagattttggaatggtgattaatatccatttatggtgtaaactttgaaaagacaatttttgatccgagattaaata 490  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24191778 caatacctaaatcaacaatagtaagagattttggaatggtgattaatatccatttatggtgtaaactttgaaaagacaatttttgatccgagattaaata 24191679  T
Q  491 tgaaggagagtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaat 590  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| || |||||| || | ||| ||||| |||||||   |||||    
T  24191678 tgaaggagagtgtgagagttaacttaaaatcaggttttacagaaatcgtgccacgatgggattgcaatgtggtatgat-ggggcgctggcag---cgaat 24191583  T
Q  591 aacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  24191582 aacagaaacatatttttcagtgcaaatttgttccaaatttt 24191542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 1072395 - 1072347
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||    
T  1072395 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggtacgatgg 1072347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 499 - 550
Target Start/End: Complemental strand, 15541681 - 15541630
Alignment:
Q  499 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 550  Q
    |||||||||||||||||||||||||| | ||||||||||||| |||||||||    
T  15541681 agtgtgagagttaacttaaaatcaggatttgcagaaatcgtgccacgatgga 15541630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 550
Target Start/End: Complemental strand, 15533220 - 15533171
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 550  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||||||    
T  15533220 tgtgagagttaacttaaaatcaggatctacagaaatcgtgccacgatgga 15533171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 15530661 - 15530613
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  15530661 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatgg 15530613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 8995255 - 8995303
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| |||| || ||||||| ||||||||    
T  8995255 tgtgagagttaacttaaaatcaggatctgtaggaatcgtggcacgatgg 8995303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 9019702 - 9019750
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| |||| || ||||||| ||||||||    
T  9019702 tgtgagagttaacttaaaatcaggatctgtaggaatcgtggcacgatgg 9019750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 30729346 - 30729298
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||||||||||||||| |||||| |||||| |||||||| ||||||||    
T  30729346 tgtgagagttaacttaatatcaggatctgcaaaaatcgtgccacgatgg 30729298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 11983418 - 11983373
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| |||||||||||||  ||||||||    
T  11983418 cgaaaaacagaaacatatttttgagtgcagatttgtttcaaatttt 11983373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 14507564 - 14507519
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| |||| |||||||| |||||||||    
T  14507564 cgaaaaacagaaacatatttttgagtgtagatttgttccaaatttt 14507519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 15541529 - 15541484
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||| |||||||||||||||  |||||||||||| |||||||||    
T  15541529 cgaatagcagaaacatatttttaggtgcagatttgttccaaatttt 15541484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 30729217 - 30729172
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||    
T  30729217 cgaataacagaaacgtatttttgggtgcagatttgttccaaatttt 30729172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 19227948 - 19227900
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||| | | ||||||| ||||||| ||||||||    
T  19227948 tgtgagagttaacttaaaattaagatctgcaggaatcgtggcacgatgg 19227900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 659713 - 659761
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  659713 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatgg 659761  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 499 - 547
Target Start/End: Complemental strand, 20508003 - 20507955
Alignment:
Q  499 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20508003 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgat 20507955  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 21947770 - 21947818
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21947770 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatgg 21947818  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 501 - 547
Target Start/End: Complemental strand, 20504452 - 20504406
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  20504452 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgat 20504406  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 501 - 540
Target Start/End: Complemental strand, 661286 - 661247
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtg 540  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  661286 tgtgagagttaacttaaaatcaggttctgcagaaatcgtg 661247  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 569
Target Start/End: Complemental strand, 31466496 - 31466428
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatggaatcgcaatgaggcacgatg 569  Q
    |||||||||||||||||||||||||| ||||| ||||||| |||||| |||  |||| | |||||||||    
T  31466496 tgtgagagttaacttaaaatcaggttttgcaggaatcgtggcacgattgaagggcaacgtggcacgatg 31466428  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 499 - 549
Target Start/End: Complemental strand, 2818849 - 2818798
Alignment:
Q  499 agtgtgagagttaa-cttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  2818849 agtgtgagagttaaacttaaaattaggttctgcagaaatcgtggcacgatgg 2818798  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 501 - 540
Target Start/End: Complemental strand, 12556441 - 12556402
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtg 540  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  12556441 tgtgagagttaatttaaaatcaggttctgcagaaatcgtg 12556402  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 549
Target Start/End: Original strand, 16775895 - 16775945
Alignment:
Q  499 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||||||| |||||||||||||||| ||||||| ||||||| ||||||||    
T  16775895 agtgtgagaattaacttaaaatcaggatctgcaggaatcgtggcacgatgg 16775945  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 570
Target Start/End: Original strand, 2174677 - 2174749
Alignment:
Q  498 gagtgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatggaatcgcaatgaggcacgatgg 570  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| |||||||| |  |||| | ||||||||||    
T  2174677 gagtgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatggcaaggcaacgtggcacgatgg 2174749  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 2174809 - 2174854
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  2174809 cgaaaaacagaaacatatttttgagtgcagatttgttccaaatttt 2174854  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 582 - 631
Target Start/End: Original strand, 16776043 - 16776092
Alignment:
Q  582 gcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||| ||||||||||||||||| |||| |||||||| |||||||||    
T  16776043 gcatcgaaaaacagaaacatatttttgagtgaagatttgttccaaatttt 16776092  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 21947917 - 21947962
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||    
T  21947917 cgaataacagaaacatatttttgggtgcagatttgttccaaatttt 21947962  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 39797978 - 39798023
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||    
T  39797978 cgaataacagaaacatatttttgggtgcagatttgttccaaatttt 39798023  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 550
Target Start/End: Complemental strand, 31179933 - 31179884
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgga 550  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  31179933 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgga 31179884  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 38881845 - 38881891
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  38881845 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 38881891  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 548
Target Start/End: Original strand, 6756257 - 6756302
Alignment:
Q  503 tgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatg 548  Q
    |||| ||||| ||||||||||||||| ||||||||||| |||||||    
T  6756257 tgagggttaatttaaaatcaggttctacagaaatcgtggcacgatg 6756302  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 21684850 - 21684805
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| |||||||||||||  ||||||||    
T  21684850 cgaaaaacagaaacatatttttgagtgcagatttgttacaaatttt 21684805  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 21684969 - 21684921
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  21684969 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 21684921  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 25921862 - 25921817
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||    
T  25921862 cgaataacagaaacgtatttttgggtgcagatttgttccaaatttt 25921817  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 25921992 - 25921944
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  25921992 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 25921944  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 34479972 - 34479924
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  34479972 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 34479924  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 38881995 - 38882040
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||    
T  38881995 cgaataacagaaacgtatttttgggtgcagatttgttccaaatttt 38882040  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 40032586 - 40032538
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40032586 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatgg 40032538  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 504 - 549
Target Start/End: Complemental strand, 6259351 - 6259306
Alignment:
Q  504 gagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  6259351 gagagttaacttaaaatcaggttctgcagaaatcgtggcacgatgg 6259306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 533 - 631
Target Start/End: Complemental strand, 13910482 - 13910388
Alignment:
Q  533 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||| ||||||||  ||||| || |||||||||| | | ||||||||   ||| ||||||||||||||||| ||||||||||||| |||||||||    
T  13910482 aaatcgtggcacgatggggtcgcattgtggcacgatggtg-cgctggcagc---gaaaaacagaaacatatttttgagtgcagatttgttccaaatttt 13910388  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 21521234 - 21521186
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  21521234 tgtgagagttaacttaaaatcaggttctacaggaatcgtggcacgatgg 21521186  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 6264534 - 6264489
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||    
T  6264534 cgaataacagaaacatatttttgggtgcagatttgttccaaatttt 6264489  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 42064381 - 42064426
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  42064381 cgaaaaacagaaacatattttttagtgcagatttgttccaaatttt 42064426  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 631
Target Start/End: Complemental strand, 18800686 - 18800646
Alignment:
Q  591 aacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  18800686 aacagaaacatatttttaagtgcagatttgttccaaatttt 18800646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 18800819 - 18800775
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacg 545  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||    
T  18800819 tgtgagagttaacttaaaatcatgttctggagaaatcgtggcacg 18800775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 547
Target Start/End: Complemental strand, 22407950 - 22407902
Alignment:
Q  499 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    |||||||||||||| ||||||| ||||||||||| ||||||| ||||||    
T  22407950 agtgtgagagttaatttaaaattaggttctgcaggaatcgtggcacgat 22407902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 549
Target Start/End: Complemental strand, 6264658 - 6264615
Alignment:
Q  506 gagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||    
T  6264658 gagttaacttaaaatcaggttctgcagaaattgttgcacgatgg 6264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 547
Target Start/End: Original strand, 42064230 - 42064277
Alignment:
Q  500 gtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    ||||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  42064230 gtgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 42064277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 19504734 - 19504689
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||||||||| ||||||  |||||||||||| |||||||||    
T  19504734 cgaataacagaaacacatttttaggtgcagatttgttccaaatttt 19504689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 28462838 - 28462805
Alignment:
Q  507 agttaacttaaaatcaggttctgcagaaatcgtg 540  Q
    ||||||||||||||||||||||| ||||||||||    
T  28462838 agttaacttaaaatcaggttctggagaaatcgtg 28462805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 631
Target Start/End: Complemental strand, 6259203 - 6259159
Alignment:
Q  587 gaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||||||||||  ||||||| |||| |||||||||    
T  6259203 gaataacagaaacatatttttgggtgcagacttgttccaaatttt 6259159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 627
Target Start/End: Complemental strand, 21521133 - 21521043
Alignment:
Q  533 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaa 627  Q
    |||||||| |||||||| ||||||| | |||||||||| | | ||||||||   |||||||| |||| |||||||  |||||||||||| |||||    
T  21521133 aaatcgtgccacgatgggatcgcaacgtggcacgatggtg-cgctggcagc---gaataacataaacgtatttttgggtgcagatttgttccaaa 21521043  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 631
Target Start/End: Original strand, 27104670 - 27104710
Alignment:
Q  591 aacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| |||||||||||| ||||||||||||| |||||||||    
T  27104670 aacataaacatatttttgagtgcagatttgttccaaatttt 27104710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 543
Target Start/End: Original strand, 35107016 - 35107060
Alignment:
Q  499 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtca 543  Q
    |||||||||||||||||||||| ||||| || ||||| |||||||    
T  35107016 agtgtgagagttaacttaaaattaggttatggagaaaacgtgtca 35107060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 501 - 548
Target Start/End: Original strand, 32218836 - 32218883
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatg 548  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  32218836 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatg 32218883  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 549
Target Start/End: Complemental strand, 48362187 - 48362138
Alignment:
Q  500 gtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  48362187 gtgtgagagttaacttaaaatcaggttctgtagaaatcgtggcacgatgg 48362138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 32264580 - 32264532
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  32264580 tgtgagagttaacttaaaatcaggttttgcagaaatcgtggcacgatgg 32264532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 550
Target Start/End: Original strand, 45882659 - 45882708
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 550  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  45882659 tgtgagagttaacttaaaatcaggatctgcaaaaatcgtgccacgatgga 45882708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 26720268 - 26720316
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  26720268 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatgg 26720316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 547
Target Start/End: Original strand, 18162404 - 18162451
Alignment:
Q  500 gtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||||    
T  18162404 gtgtgagagttaacttaaaatcaggatctgcataaatcgtgccacgat 18162451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 1321311 - 1321356
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  1321311 cgaaaaacagaaacatatttttgagtgcagatttgttccaaatttt 1321356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 5191523 - 5191568
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  5191523 cgaaaaacagaaacatatttttgagtgcagatttgttccaaatttt 5191568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 10084780 - 10084735
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  10084780 cgaaaaacagaaacatatttttgagtgcagatttgttccaaatttt 10084735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 11170274 - 11170319
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||    
T  11170274 cgaataacagaaacatatttttgggtgcagatttgttccaaatttt 11170319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 500 - 545
Target Start/End: Original strand, 24176998 - 24177043
Alignment:
Q  500 gtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacg 545  Q
    ||||||||||||||||||||||| |||||| |||||||||| ||||    
T  24176998 gtgtgagagttaacttaaaatcaagttctggagaaatcgtggcacg 24177043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 26720418 - 26720463
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  26720418 cgaaaaacagaaacatattttttagtgcagatttgttccaaatttt 26720463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 46967022 - 46966977
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||    
T  46967022 cgaaaaacagaaacatatttttcaatgcagatttgttccaaatttt 46966977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 540
Target Start/End: Complemental strand, 10956563 - 10956524
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtg 540  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  10956563 tgtgagagttaacttaaaatcaggatctgcaggaatcgtg 10956524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 1321161 - 1321207
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  1321161 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 1321207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 11162891 - 11162937
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  11162891 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 11162937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 550
Target Start/End: Original strand, 25388618 - 25388667
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgga 550  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  25388618 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgga 25388667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 5523002 - 5522957
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| |||||||||||||  ||||||||    
T  5523002 cgaaaaacagaaacatatttttgagtgcagatttgtttcaaatttt 5522957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 7606963 - 7606915
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  7606963 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtgacacgatgg 7606915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 10191700 - 10191655
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| |||||| |||||| |||||||||    
T  10191700 cgaaaaacagaaacatatttttgagtgcaaatttgttccaaatttt 10191655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 11163020 - 11163065
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||    
T  11163020 cgaataacagaaacgtatttttgggtgcagatttgttccaaatttt 11163065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 18097422 - 18097374
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  18097422 tgtgagagttaacttaaaatcaggtttctgca-aaatcgtggcacgatgg 18097374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 18099707 - 18099659
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  18099707 tgtgagagttaacttaaaatcaggtttctgca-aaatcgtggcacgatgg 18099659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 18162534 - 18162579
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||    
T  18162534 cgaataacagaaacgtatttttgggtgcagatttgttccaaatttt 18162579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 22114692 - 22114647
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||    
T  22114692 cgaataacagaaacgtatttttgggtgcagatttgttccaaatttt 22114647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 24979577 - 24979622
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||| ||||||||||||  |||||||||||| |||||||||    
T  24979577 cgaataacataaacatattttttggtgcagatttgttccaaatttt 24979622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 32264430 - 32264385
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||||||||||||||||  ||||||||||||  ||||||||    
T  32264430 cgaataacagaaacatatttttgggtgcagatttgtttcaaatttt 32264385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 11170145 - 11170189
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacg 545  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||    
T  11170145 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacg 11170189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 547
Target Start/End: Complemental strand, 53896755 - 53896708
Alignment:
Q  500 gtgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgat 547  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  53896755 gtgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgat 53896708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 501 - 629
Target Start/End: Original strand, 22392292 - 22392416
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaaca 600  Q
    |||||||||||| ||||||||||||| || |||||||||| |||||||| ||||||| | || ||||| || || ||||  |||   || ||||||||      
T  22392292 tgtgagagttaatttaaaatcaggttatggagaaatcgtgccacgatgggatcgcaacgtggtacgat-ggtgcgctggaggca---aaaaacagaaatg 22392387  T
Q  601 tatttttcagtgcagatttgtaccaaatt 629  Q
    ||||||||||||||||||||| |||||||    
T  22392388 tatttttcagtgcagatttgttccaaatt 22392416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 547
Target Start/End: Original strand, 18567362 - 18567409
Alignment:
Q  500 gtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  18567362 gtgtgagagttgacttaaaatcaggttctacagaaatcgtggcacgat 18567409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 547
Target Start/End: Complemental strand, 31435587 - 31435540
Alignment:
Q  500 gtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  31435587 gtgtgagagttgacttaaaatcaggttctacagaaatcgtggcacgat 31435540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 499 - 550
Target Start/End: Original strand, 42006314 - 42006365
Alignment:
Q  499 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 550  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||| ||||    
T  42006314 agtgtgagagttaacttaaaatcaggttttggagaaatcgtctcacgttgga 42006365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 585 - 631
Target Start/End: Original strand, 45366445 - 45366491
Alignment:
Q  585 tcgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  45366445 tcgaaaaacagaaacgtatttttcagtgcagatttgttccaaatttt 45366491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 588 - 631
Target Start/End: Original strand, 44466 - 44509
Alignment:
Q  588 aataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||    
T  44466 aataacataaacatatttttgggtgcagatttgtaccaaatttt 44509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 35379 - 35425
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  35379 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 35425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 44314 - 44360
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  44314 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 44360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 547
Target Start/End: Complemental strand, 1049813 - 1049767
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  1049813 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 1049767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 631
Target Start/End: Complemental strand, 27306623 - 27306573
Alignment:
Q  581 agcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| |||||||||||||| |||||||  |||||||||||| |||||||||    
T  27306623 agcagcgaataacagaaacgtatttttgggtgcagatttgttccaaatttt 27306573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 1049684 - 1049639
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||    
T  1049684 cgaataacagaaacgtatttttgggtgcagatttgttccaaatttt 1049639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 40837261 - 40837213
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  40837261 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 40837213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 27306767 - 27306720
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||| ||||| |||| |||||||| ||||||||    
T  27306767 tgtgagagttaacttaaaataaggttttgca-aaatcgtggcacgatgg 27306720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 51015190 - 51015235
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  51015190 cgaataacagaaacatatttttcagtgcagatttgttccaaatttt 51015235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 48486113 - 48486161
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  48486113 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatgg 48486161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 36920125 - 36920078
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  36920125 tgtgagagttaacttaaaatcaggttctgca-aaatcgtggcacgatgg 36920078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 16631068 - 16631114
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    ||||||||||||||||||||||||||||| | |||||||| ||||||    
T  16631068 tgtgagagttaacttaaaatcaggttctggaaaaatcgtgccacgat 16631114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 5198364 - 5198409
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  5198364 cgaaaaacagaaacatatttttgagtgcagatttgttccaaatttt 5198409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 534
Target Start/End: Complemental strand, 9174684 - 9174651
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaa 534  Q
    ||||||||||||||||||||||||||||||||||    
T  9174684 tgtgagagttaacttaaaatcaggttctgcagaa 9174651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 11434899 - 11434944
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  11434899 cgaaaaacagaaacatatttttgagtgcagatttgttccaaatttt 11434944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 570
Target Start/End: Complemental strand, 22044930 - 22044861
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatggaatcgcaatgaggcacgatgg 570  Q
    |||||||||||||||||||||| | ||||||| ||||||| |||||| |||  |||| | ||||||||||    
T  22044930 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgattgaagggcaacgtggcacgatgg 22044861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 24888740 - 24888785
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  24888740 cgaaaaacagaaacatatttttgagtgcagatttgttccaaatttt 24888785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 31849988 - 31849943
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  31849988 cgaaaaacagaaacatatttttgagtgcagatttgttccaaatttt 31849943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 38409143 - 38409188
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  38409143 cgaaaaacagaaacatatttttgagtgcagatttgttccaaatttt 38409188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 36922033 - 36921986
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  36922033 tgtgagagttaacttaaaatcaggttctgca-aaatcgtggtacgatgg 36921986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 586 - 629
Target Start/End: Complemental strand, 8756639 - 8756596
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatt 629  Q
    |||||||||||||||||||| || |||||||||||| |||||||    
T  8756639 cgaataacagaaacatatttctcggtgcagatttgttccaaatt 8756596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 549
Target Start/End: Complemental strand, 52943002 - 52942959
Alignment:
Q  506 gagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||    
T  52943002 gagttaacttaaaatcaggttttgcaaaaatcgtggcacgatgg 52942959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 16638549 - 16638595
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    ||||||||||||| ||||||||||||||| | |||||||| ||||||    
T  16638549 tgtgagagttaacataaaatcaggttctggaaaaatcgtgccacgat 16638595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 503 - 545
Target Start/End: Complemental strand, 40091952 - 40091910
Alignment:
Q  503 tgagagttaacttaaaatcaggttctgcagaaatcgtgtcacg 545  Q
    |||||||||||||||||||||||||||||  ||||||| ||||    
T  40091952 tgagagttaacttaaaatcaggttctgcaataatcgtggcacg 40091910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 3824962 - 3824917
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||    
T  3824962 cgaataacagaaacgtatttttgggtgcagatttgttccaaatttt 3824917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 3825112 - 3825064
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  3825112 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtgacacgatgg 3825064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 7941133 - 7941181
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  7941133 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 7941181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 7941263 - 7941308
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||    
T  7941263 cgaataacagaaacgtatttttgggtgcagatttgttccaaatttt 7941308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 582 - 631
Target Start/End: Original strand, 24878929 - 24878978
Alignment:
Q  582 gcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||||||| |||||||  ||||| |||||| |||||||||    
T  24878929 gcatcgaataacagaaacgtatttttgggtgcatatttgttccaaatttt 24878978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 37089763 - 37089718
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||    
T  37089763 cgaataacagaaacgtatttttaggtgcagatttgttccaaatttt 37089718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 48486263 - 48486308
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||    
T  48486263 cgaataacagaaacgtatttttgggtgcagatttgttccaaatttt 48486308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 52942836 - 52942791
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||| ||||||||||||  |||||||||||| |||||||||    
T  52942836 cgaataacataaacatattttttggtgcagatttgttccaaatttt 52942791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 534
Target Start/End: Complemental strand, 9177037 - 9177001
Alignment:
Q  499 agtgtgagagttaacttaaaatcagg-ttctgcagaa 534  Q
    |||||||||||||||||||||||||| ||||||||||    
T  9177037 agtgtgagagttaacttaaaatcaggtttctgcagaa 9177001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 631
Target Start/End: Complemental strand, 22044773 - 22044734
Alignment:
Q  591 aacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  22044773 aacagaaacatattttt-agtgcagatttgttccaaatttt 22044734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 631
Target Start/End: Complemental strand, 22047068 - 22047029
Alignment:
Q  591 aacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  22047068 aacagaaacatattttt-agtgcagatttgttccaaatttt 22047029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 529
Target Start/End: Original strand, 24878796 - 24878824
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctg 529  Q
    |||||||||||||||||||||||||||||    
T  24878796 tgtgagagttaacttaaaatcaggttctg 24878824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 631
Target Start/End: Complemental strand, 36921933 - 36921839
Alignment:
Q  533 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||| ||||||||  ||||| || |||||||||| | || |||||||   ||||||||||||| |||||||   ||||||||||| |||||||||    
T  36921933 aaatcgtggcacgatggggtcgcattgtggcacgatggtg-cattggcagc---gaataacagaaacgtatttttggatgcagatttgttccaaatttt 36921839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 502 - 550
Target Start/End: Original strand, 47274522 - 47274570
Alignment:
Q  502 gtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 550  Q
    ||||||||||||||||||| ||| | || |||||||||| |||||||||    
T  47274522 gtgagagttaacttaaaattaggatatgtagaaatcgtgccacgatgga 47274570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 14098510 - 14098462
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  14098510 tgtgagagttaacttaaaatcagattctgcagaaatcgtggcacgatgg 14098462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 39462258 - 39462306
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  39462258 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgacacaatgg 39462306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 41646681 - 41646727
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||    
T  41646681 tgtgagagttaacttaaaatcatgttctgcagaaatcgtggcacgat 41646727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 550
Target Start/End: Complemental strand, 13461392 - 13461343
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 550  Q
    |||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  13461392 tgtgagagttaacttaaaatcaggatctgcaggaatcgtgccacgatgga 13461343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 547
Target Start/End: Complemental strand, 28207581 - 28207540
Alignment:
Q  506 gagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  28207581 gagttaacttaaaatcaggttctgcagaaatcgtggcacgat 28207540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 15823286 - 15823334
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  15823286 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatgg 15823334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 549
Target Start/End: Complemental strand, 38925996 - 38925950
Alignment:
Q  503 tgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||    
T  38925996 tgagagttaacttaaaatcaggttccgcagaaatcgtggtacgatgg 38925950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 28840568 - 28840613
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||    
T  28840568 cgaaaaacagaaacatatttttgagtgcagatttgttccaaatttt 28840613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 28840418 - 28840466
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||| |||||||||||||||||| ||||||| ||||||| ||||||||    
T  28840418 tgtgaaagttaacttaaaatcaggatctgcaggaatcgtggcacgatgg 28840466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 631
Target Start/End: Original strand, 28842334 - 28842428
Alignment:
Q  533 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||| |||||||| ||||||  | |||||||||| | | ||||||||   ||| ||||||||||||||||| |||||| |||||| |||||||||    
T  28842334 aaatcgtggcacgatgggatcgcatcgtggcacgatggtgtc-ctggcagc---gaaaaacagaaacatatttttgagtgcaaatttgttccaaatttt 28842428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 47451405 - 47451453
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||||||||||||| ||||||| || ||||||||||||| ||||||||    
T  47451405 tgtgagagttaacttcaaatcagattttgcagaaatcgtggcacgatgg 47451453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 49687301 - 49687349
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||||| || |||||||||| || |||||    
T  49687301 tgtgagagttaacttaaaatcaggttatgtagaaatcgtggcatgatgg 49687349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 547
Target Start/End: Complemental strand, 3580159 - 3580113
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    |||| ||||||||||||||||||||| ||||| ||||||| ||||||    
T  3580159 tgtgggagttaacttaaaatcaggttatgcaggaatcgtggcacgat 3580113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 6822775 - 6822823
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  6822775 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 6822823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 13761577 - 13761625
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  13761577 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 13761625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 13761727 - 13761772
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||    
T  13761727 cgaataacagaaacgtatttttgggtgcagatttgttccaaatttt 13761772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 20302349 - 20302394
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||||||||||||||||  ||||| |||||| |||||||||    
T  20302349 cgaataacagaaacatatttttgggtgcatatttgttccaaatttt 20302394  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 41646810 - 41646855
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||||||||||||||||   ||||||||||| |||||||||    
T  41646810 cgaataacagaaacatatttttggatgcagatttgttccaaatttt 41646855  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 51749929 - 51749974
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||    
T  51749929 cgaataacagaaacgtatttttgggtgcagatttgttccaaatttt 51749974  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 51752104 - 51752152
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  51752104 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 51752152  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 537
Target Start/End: Complemental strand, 28201947 - 28201911
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatc 537  Q
    |||||||||||||||||||||| |||||| |||||||    
T  28201947 tgtgagagttaacttaaaatcatgttctgtagaaatc 28201911  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 28842233 - 28842281
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||| |||||||||||||||||| |||| || ||||||| ||||||||    
T  28842233 tgtgaaagttaacttaaaatcaggatctgtaggaatcgtggcacgatgg 28842281  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 631
Target Start/End: Complemental strand, 30790780 - 30790740
Alignment:
Q  591 aacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| |||| ||||||||||||||||||||| |||||||||    
T  30790780 aacataaacgtatttttcagtgcagatttgttccaaatttt 30790740  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 12517565 - 12517517
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  12517565 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatgg 12517517  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 15072506 - 15072554
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  15072506 tgtgagagttaacttaaaatcagattctgcaggaatcgtgacacgatgg 15072554  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 27826782 - 27826828
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  27826782 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgat 27826828  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 27829093 - 27829139
Alignment:
Q  501 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 547  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  27829093 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgat 27829139  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 631
Target Start/End: Original strand, 15072607 - 15072701
Alignment:
Q  533 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||||||||||| ||||||| | |||| ||||| | | ||||||||   ||||||||||||| |||||||  ||||| |||||| |||||||||    
T  15072607 aaatcgtgtcacgatgggatcgcaacgtggcatgatggtg-cgctggcagc---gaataacagaaacgtatttttgggtgcaaatttgttccaaatttt 15072701  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 631
Target Start/End: Original strand, 27826883 - 27826977
Alignment:
Q  533 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||| |||||||| ||||||  | |||||||||| | | ||||||||   ||| |||| |||||||||||| ||||||||||||| |||||||||    
T  27826883 aaatcgtggcacgatgggatcgcatcgtggcacgatggtg-cgctggcagc---gaaaaacaaaaacatatttttgagtgcagatttgttccaaatttt 27826977  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 631
Target Start/End: Original strand, 27829194 - 27829288
Alignment:
Q  533 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||| |||||||| ||||||  | |||||||||| | | ||||||||   ||| |||| |||||||||||| ||||||||||||| |||||||||    
T  27829194 aaatcgtggcacgatgggatcgcatcgtggcacgatggtg-cgctggcagc---gaaaaacaaaaacatatttttgagtgcagatttgttccaaatttt 27829288  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 549
Target Start/End: Complemental strand, 28252122 - 28252078
Alignment:
Q  505 agagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||    
T  28252122 agagttaacttaaaatcaggatctgcaggaatcgtggcacgatgg 28252078  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 586 - 628
Target Start/End: Complemental strand, 2468487 - 2468445
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaat 628  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||    
T  2468487 cgaataacagaaacgtattttttagtgcagatttgttccaaat 2468445  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 4423972 - 4424009
Alignment:
Q  594 agaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  4423972 agaaacatatttttgagtgcagatttgttccaaatttt 4424009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 12517415 - 12517370
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| |||||| |||||| |||||||||    
T  12517415 cgaaaaacagaaacatatttttgagtgcaaatttgttccaaatttt 12517370  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 631
Target Start/End: Original strand, 15067878 - 15067972
Alignment:
Q  533 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||| || |||||||| ||||||| | |||||||||| | | ||||||||   |||||||| |||| |||||||  |||||||||||| |||||||||    
T  15067878 aaatcatgccacgatgggatcgcaacgtggcacgatggtg-cgctggcagc---gaataacaaaaacgtatttttgggtgcagatttgttccaaatttt 15067972  T

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Target: scaffold0131 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 14918 - 14963
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||    
T  14918 cgaataacagaaacatatttttgggtgcagatttgttccaaatttt 14963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 547
Target Start/End: Original strand, 14768 - 14814
Alignment:
Q  502 gtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgat 547  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  14768 gtgagagttaacttaaaatcaggattctgcaggaatcgtggcacgat 14814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 548
Target Start/End: Complemental strand, 13056 - 13007
Alignment:
Q  499 agtgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatg 548  Q
    |||||||||||||||||||||||||| |||||||| ||||||| |||||||    
T  13056 agtgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatg 13007  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 28941 - 28989
Alignment:
Q  501 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 549  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  28941 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 28989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 631
Target Start/End: Original strand, 29060 - 29105
Alignment:
Q  586 cgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||| ||||||||||||||||| |||||||||||||  ||||||||    
T  29060 cgaaaaacagaaacatatttttgagtgcagatttgttacaaatttt 29105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 502 - 550
Target Start/End: Original strand, 3747 - 3795
Alignment:
Q  502 gtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 550  Q
    ||||||||||||||||||| ||| | || |||||||||| |||||||||    
T  3747 gtgagagttaacttaaaattaggatatgtagaaatcgtgccacgatgga 3795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 631
Target Start/End: Original strand, 2730 - 2824
Alignment:
Q  533 aaatcgtgtcacgatggaatcgcaatgaggcacgatgggggcactggcagcatcgaataacagaaacatatttttcagtgcagatttgtaccaaatttt 631  Q
    |||||||| |||||||| ||||||  | |||||||||| | | ||||||||   |||||||| |||| |||||||  |||||||||||| |||||||||    
T  2730 aaatcgtggcacgatgggatcgcatcgtggcacgatggtg-cgctggcagc---gaataacataaacgtatttttgggtgcagatttgttccaaatttt 2824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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