View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3261_low_2 (Length: 435)
Name: NF3261_low_2
Description: NF3261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3261_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 22836675 - 22837090
Alignment:
| Q |
18 |
cacactaaccttcttccacttcctcctcttcactcaagccacaaaaaacccagatttccactcactacttgcattcaaaacaaccaccgacacatccaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22836675 |
cacactaaccttcttccacttcctcctcttcactcacgccacaaaaaacccagatttccactcactacttgcattcaaaacaaccaccgacacatccaac |
22836774 |
T |
|
| Q |
118 |
aaactcaacacatggaacatcaccacaaacctatgcacatggtacggtgtctcttgtcttaggaaccgtgtctcccgcctagtcctcgaaaacctcgacc |
217 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
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| T |
22836775 |
aaactcaccacatggaacatcaccacaaacctatgcacatggtacggtgtctcttgtctaagaaaccgtgtctcccgccttgtcctcgaaaacctcgacc |
22836874 |
T |
|
| Q |
218 |
tccacggctcgatggaaccgttaaccgcacttactcagctccgtgtactcagccttaaacgcaaccgtttcaacggtcccattccaaatctctccaactt |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22836875 |
tccacggctcgatggaaccgttaaccgcacttactcagctccgtgtactcagccttaaacgcaaccgtttcaacggtcccattccaaatctctccaactt |
22836974 |
T |
|
| Q |
318 |
aacttcactaagacttctgttcctttcttacaataatttctccggtgagtttccggaaagtttaaccttgttaacccgtctctaccggcttgatctcgct |
417 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22836975 |
aacttcactaagacttttgttcctttcttacaacaatttctccggtgagtttcccgaaagtttaacctcgttaacccgtctctaccggcttgatctcgct |
22837074 |
T |
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| Q |
418 |
gataacaatctctctg |
433 |
Q |
| |
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|||||||||||||||| |
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| T |
22837075 |
gataacaatctctctg |
22837090 |
T |
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