View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3261_low_4 (Length: 345)
Name: NF3261_low_4
Description: NF3261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3261_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 129 - 338
Target Start/End: Complemental strand, 573778 - 573569
Alignment:
| Q |
129 |
gatcaagagcatgtaaggaaaggtccatggaaaacagaagaagatgaagtgttacttcatcatgtgaagaagtatggtccaagagattggagctccattc |
228 |
Q |
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| T |
573778 |
gatcaagagcatgtaaggaaaggtccatggaaaacagaagaagatgaagtgttacttcatcatgtgaagaagtatggtccaagagattggagctccattc |
573679 |
T |
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| Q |
229 |
gatccaaaggtcttcttcaaagaactggcaagtcttgtcgtcttcgttgggtcaataaacttcgacctaacctcaaaaagtatgtaatatccttacttca |
328 |
Q |
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| T |
573678 |
gatccaaaggtcttcttcaaagaactggcaagtcttgtcgtcttcgttgggtcaataaacttcgacctaacctcaaaaagtatgtaatatccttacttca |
573579 |
T |
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| Q |
329 |
ctttcatctc |
338 |
Q |
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| T |
573578 |
ctttcatctc |
573569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 573888 - 573807
Alignment:
| Q |
19 |
agtagaaaatgaataaataaataaaccagaatgtaaagtagttaagtgtgtcttgtttttaatgaataatattattataggt |
100 |
Q |
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| T |
573888 |
agtagaaaatgaataaataaataaaccagaatgtaaagtagttaagtgtgtcttgtttttaatgaataatattattataggt |
573807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 10213631 - 10213528
Alignment:
| Q |
165 |
gaagaagatgaagtgttacttcatcatgtgaagaagtatggtccaagagattggagctccattcgatccaaaggtcttcttcaaagaactggcaagtctt |
264 |
Q |
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| T |
10213631 |
gaagaagatgaagtgttgttgaaacatgttaacaaatatggtcctagagattggagctccattcgatccaaaggtcttttgccaagaactggaaaatctt |
10213532 |
T |
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| Q |
265 |
gtcg |
268 |
Q |
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| T |
10213531 |
gtcg |
10213528 |
T |
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