View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3261_low_6 (Length: 266)
Name: NF3261_low_6
Description: NF3261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3261_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 3018290 - 3018516
Alignment:
| Q |
18 |
atgggaaactagaatgcagcatatgctcaataacttttacaatttcagtgttaccaaaagaactaaaatgagtgtttgctctttaaaattgtgtcgcatt |
117 |
Q |
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| T |
3018290 |
atgggaaactagaatgcagcatatgctcaataacttttacaatttcagtgtcaccaaaagaactaaaatgagtgtttgctctttaaaattgtgtcgcatt |
3018389 |
T |
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| Q |
118 |
ggaacatcctaaagcctaagctgtagagctagtga-nnnnnnnngtgaaacatagtaatctaataatatcaagccaatcattgtataactaatgatttag |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3018390 |
ggaacatcctaaagcctaagctgtagagctagtgatttttttttgtgaaacatagtaatctaataatatcaagccaatcattgtataactaatgatttag |
3018489 |
T |
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| Q |
217 |
aggctttggtaatttccacactaaatt |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3018490 |
aggctttggtaatttccacactaaatt |
3018516 |
T |
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