View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3262_high_1 (Length: 453)
Name: NF3262_high_1
Description: NF3262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3262_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 15527327 - 15526889
Alignment:
| Q |
1 |
cgaacttgcattctgtccaaaagatgggagcatatttggaaatatatttccaatcttagactacattgctcaaacttttccagtttaaagagtttagata |
100 |
Q |
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| T |
15527327 |
cgaacttgcattctgtccaaaagatgggagcatatttggaaatatatttccaatcttagactacattgctcaaacttttccagtttaaagagttttgata |
15527228 |
T |
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| Q |
101 |
aattcgtgtctagaattctgtctcttcgtcatagcaaaattgtattgcaaaatgtttattttgaacgtagtggtagtattgagtttggcctacttaaaaa |
200 |
Q |
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| T |
15527227 |
aattcgtgtctagaattctgtctcttcgtcatagcaaaattgtattgcaaactgtttattttgaacgtagtggtagtattgagtttggcctacttaaaaa |
15527128 |
T |
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| Q |
201 |
agtagcaaattatgttttatcgcacagtgccaagctcgatcgattagaaattgatgtgaaaggcgatatatgtcatatcctaccttgcatttcttcgtct |
300 |
Q |
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| T |
15527127 |
agtagcaaattatgttttatcgcacagtgccaagctcgatcgattagaaattgatgtgaaaggcgatatatgtcatatcctaccttgcatttcttcgtct |
15527028 |
T |
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| Q |
301 |
cagacgttaacatcacttaggctatccgtttcgcctaaaggtcgttataattattggagaacgttgtttcctaactcacttgatttaccagcgttaacct |
400 |
Q |
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| T |
15527027 |
cagacgttaacatcacttaggctatccgtttcgcctaaaggtcgttataattattggagaacgttgtttcctaactcactagatttaccagtgttaacct |
15526928 |
T |
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| Q |
401 |
gtctacatctaggaaattttgtcttttgcgccactgatg |
439 |
Q |
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| T |
15526927 |
gtctacatctaggaaattttgtcttttgcgccactgatg |
15526889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 428
Target Start/End: Complemental strand, 36591200 - 36591031
Alignment:
| Q |
259 |
aaaggcgatatatgtcatatcctaccttgcatttcttcgtctcagacgttaacatcacttaggctatccgtttcgcctaaaggtcgttataattattgga |
358 |
Q |
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| T |
36591200 |
aaaggggatatttgtcatattctgccttgtgtttcttcgtgtcggactttaacgtctcttaagctttctgtttcgcccaaagggaggcataattatggga |
36591101 |
T |
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| Q |
359 |
gaacgttgtttcctaactcacttgatttaccagcgttaacctgtctacatctaggaaattttgtcttttg |
428 |
Q |
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| T |
36591100 |
gaacgttgtttccaaaatcattggatttgccagcgttaaccagtttgcatctagggaatttcgtcttttg |
36591031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 15582015 - 15581944
Alignment:
| Q |
208 |
aattatgttttatcgcacagtgccaagctcgatcgattagaaattgatgtgaaaggcgatatatgtcatatc |
279 |
Q |
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| T |
15582015 |
aattatgttttatctcacaatgcccaactcaatcgactaggatttgatgttaaaggcgatatatgtcatatc |
15581944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 15582225 - 15582097
Alignment:
| Q |
1 |
cgaacttgcattctgtccaaaagatgggagcatatttggaaatatatttccaatcttagactacattgctcaaacttttccagtttaaagagtttagata |
100 |
Q |
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||||||||| || |||| ||||||||| |||||||||||||| ||||| | | |||| | | |||| |||| ||||||| | ||| ||| |||| | | |
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| T |
15582225 |
cgaacttgcgttttgtctaaaagatggaagcatatttggaaacatattcctatccttacattgcattactcagacttttcaactttgaagtgtttccaca |
15582126 |
T |
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| Q |
101 |
aattcgtgtctagaattctgtctcttcgt |
129 |
Q |
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| T |
15582125 |
aatttgtgtctagggttttgtctcttcgt |
15582097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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