View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3262_high_3 (Length: 396)

Name: NF3262_high_3
Description: NF3262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3262_high_3
NF3262_high_3
[»] chr7 (4 HSPs)
chr7 (36-105)||(8431501-8431570)
chr7 (168-247)||(8434908-8434986)
chr7 (182-251)||(8378248-8378317)
chr7 (265-313)||(8339289-8339337)
[»] scaffold0060 (2 HSPs)
scaffold0060 (168-247)||(75437-75515)
scaffold0060 (36-93)||(75920-75977)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 8431501 - 8431570
Alignment:
Q  36 aaatgacaaatcttaacactaattgaaattaggagtacaagaagttatagagagcaacagaatgcagatt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8431501 aaatgacaaatcttaacactaattgaaattaggagtacaagaagttatagagagcaacagaatgcagatt 8431570  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 8434908 - 8434986
Alignment:
Q  168 tgttccttaatactagtcaacatccacatttgagtagagcaaaacaaagttcttcccaccaaagtccatatatgaaagcc 247  Q
    |||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  8434908 tgttccctaata-tagtcaacatctacatttgagtagaacaaaacaaagttcttcccaccaaagtccttatattaaagcc 8434986  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 8378248 - 8378317
Alignment:
Q  182 agtcaacatccacatttgagtagagcaaaacaaagttcttcccaccaaagtccatatatgaaagcctcta 251  Q
    |||||||||||||||||||||| | |||||| |||||||||||||||| ||||||||||  |||||||||    
T  8378248 agtcaacatccacatttgagtaaaacaaaaccaagttcttcccaccaatgtccatatattgaagcctcta 8378317  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 8339289 - 8339337
Alignment:
Q  265 aaaggccaaatgatgatgacaaaaaggaatgaaagaatatgatatgaat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8339289 aaaggccaaatgatgatgacaaaaaggaatgaaagaatatgatttgaat 8339337  T

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Target: scaffold0060 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 75515 - 75437
Alignment:
Q  168 tgttccttaatactagtcaacatccacatttgagtagagcaaaacaaagttcttcccaccaaagtccatatatgaaagcc 247  Q
    |||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  75515 tgttccctaata-tagtcaacatctacatttgagtagaacaaaacaaagttcttcccaccaaagtccttatattaaagcc 75437  T

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Target: scaffold0060; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 75977 - 75920
Alignment:
Q  36 aaatgacaaatcttaacactaattgaaattaggagtacaagaagttatagagagcaac 93  Q
    |||||| |||||||| || |||||||||||| ||||||||||||||||| ||| ||||    
T  75977 aaatgataaatcttatcattaattgaaattaagagtacaagaagttataaagaacaac 75920  T

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