View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3262_low_10 (Length: 236)
Name: NF3262_low_10
Description: NF3262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3262_low_10 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0141 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 8431195 - 8431415
Alignment:
| Q |
16 |
tatacaacaggctgtaaaacctgattgtgatatcaaacctatgagtcaaccaagcaagtatcatactctccaatctttacataccatgacactccattca |
115 |
Q |
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| T |
8431195 |
tatacaacaggctgtaaaacctgattgtgatatcaaacctatgagtcaaccaagcaagtatcatactctccaatctttacataccatgacactccattca |
8431294 |
T |
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| Q |
116 |
cacattttgtgaaacagtctctgaaccaatagatgtttgaaggaatttcacgaaaagcacagcagttgaagtttnnnnnnnnntaaaataagataagatt |
215 |
Q |
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| T |
8431295 |
cacattttgtgaaacagtctctgaaccaatagatgtttgaaggaatttcacgaaaagcacagcagttgaagtttaaaaataaaaaaaaaaagataagatt |
8431394 |
T |
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| Q |
216 |
tcaatgtacataatcatcgcc |
236 |
Q |
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| T |
8431395 |
tcaatgtacataatcatcgcc |
8431415 |
T |
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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 8432494 - 8432531
Alignment:
| Q |
15 |
atatacaacaggctgtaaaacctgattgtgatatcaaa |
52 |
Q |
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| T |
8432494 |
atatacaacaggctgaaaaacctgattgtgatatcaaa |
8432531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 6411 - 6329
Alignment:
| Q |
16 |
tatacaacaggctgtaaaacctgattgtgatatcaaacctatgagt--caaccaagcaagtatcatactctccaatctttaca |
96 |
Q |
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| T |
6411 |
tatacaacaggctgtaaaacctgattgtgatatcaaacctgtgagtaccaaccaagcaagtatcatactctccaatctataca |
6329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 164903 - 164845
Alignment:
| Q |
67 |
aagcaagtatcatactctccaatctttacataccatgacactccattcacacattttgt |
125 |
Q |
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| T |
164903 |
aagcaagtatcatactctccaatctttacatttcatgaagatcctttcacacattttgt |
164845 |
T |
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