View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3262_low_11 (Length: 234)
Name: NF3262_low_11
Description: NF3262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3262_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 29306227 - 29306065
Alignment:
| Q |
58 |
acaaaattgattaaaagtatacaagaaaagaagatgaatcagatgaagagattgaggacccaaagtgaagattcccacttctaaaaccatccaaactcat |
157 |
Q |
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| T |
29306227 |
acaaaattgattaaaagtatacaagaaaagaagatgaatcagatgaagagattgaggacccaaagcgaagattcccacttctaaaaccatccaaactcat |
29306128 |
T |
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| Q |
158 |
accacttcgtgaaaggaagcgttctgtcgccctcgtcagcacggccgtgtactctccgaatat |
220 |
Q |
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| T |
29306127 |
accacttcgtgaaaggaagcgctctgtcgccctcgtcagcacggccgtgtactctccgaatat |
29306065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 58 - 212
Target Start/End: Complemental strand, 29297482 - 29297328
Alignment:
| Q |
58 |
acaaaattgattaaaagtatacaagaaaagaagatgaatcagatgaagagattgaggacccaaagtgaagattcccacttctaaaaccatccaaactcat |
157 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || |||||| ||||||||| | |||| ||||||||||||||||| |
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| T |
29297482 |
acaaaattgattaaaagtatacaagaaaagaagttgaatcagatgaagaggatgatgaaccaaagcgaagattcctatttcttaaaccatccaaactcat |
29297383 |
T |
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| Q |
158 |
accacttcgtgaaaggaagcgttctgtcgccctcgtcagcacggccgtgtactct |
212 |
Q |
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| T |
29297382 |
accccttcgtgaaaggaagcgctcagtcgcccttgtcagcacagccgtgtactct |
29297328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29306436 - 29306374
Alignment:
| Q |
1 |
aaaaattgactatatgataaa-tatgtgtcataattacacatcaaatgcaagaatctaacaaa |
62 |
Q |
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| T |
29306436 |
aaaaatttactatataataaaatatgtgtcataattacacatcaaatgcaagaatctaacaaa |
29306374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29297678 - 29297627
Alignment:
| Q |
1 |
aaaaattgactatatgataaa-tatgtgtcataattacacatcaaatgcaag |
51 |
Q |
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||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |
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| T |
29297678 |
aaaaattgactatataataaaatatgtgtcacaattacacatcaaatgcaag |
29297627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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