View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3262_low_12 (Length: 230)
Name: NF3262_low_12
Description: NF3262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3262_low_12 |
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| [»] scaffold1191 (1 HSPs) |
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| [»] scaffold0571 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: scaffold1191 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold1191
Description:
Target: scaffold1191; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 2137 - 2270
Alignment:
| Q |
97 |
cttgaagtatgcttctgtgaaggattgacacatatacatacacacccacatttcttacagaaggcgtgtccgacaccggtatgccacaacactaacacat |
196 |
Q |
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| T |
2137 |
cttgaagtatgcatctgtgaatgattgacacatatacatacacacccacatttctgatagaaggcatgtccgacactggcatgccacaacactaacacat |
2236 |
T |
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| Q |
197 |
atgattacattcaattatttattttttcaaataa |
230 |
Q |
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| T |
2237 |
atgattacattcaattatttattttttcaaataa |
2270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0571 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0571
Description:
Target: scaffold0571; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 88 - 230
Target Start/End: Original strand, 10204 - 10343
Alignment:
| Q |
88 |
gaagtaaaacttgaagtatgcttctgtgaaggattgacacatatacatacacacccacatttcttacagaaggcgtgtccgacaccggtatgccacaaca |
187 |
Q |
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| T |
10204 |
gaagtaaaacttgaagtatgcttctttgaaggattgacacatatacatacacatccacatttcttatagaaggcgtgt------ccggcatgccacaaca |
10297 |
T |
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| Q |
188 |
ctaacacat---atgattacattcaattatttattttttcaaataa |
230 |
Q |
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| T |
10298 |
ctaacacatatgatgattacattcaattatttattttttcaaataa |
10343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 23948449 - 23948405
Alignment:
| Q |
185 |
acactaacacatatgattacattcaatt-atttattttttcaaat |
228 |
Q |
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| T |
23948449 |
acactgacacatatgattacattcaattaattgattttttcaaat |
23948405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 1921858 - 1921807
Alignment:
| Q |
181 |
cacaacactaacacatatgattacattcaattattt--attttttcaaataa |
230 |
Q |
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| T |
1921858 |
cacaacaataacacatgtgattacattcaattatgtgaattttttcaaataa |
1921807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 23144098 - 23144130
Alignment:
| Q |
182 |
acaacactaacacatatgattacattcaattat |
214 |
Q |
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| T |
23144098 |
acaacactaacacatatgattacattgaattat |
23144130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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