View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3262_low_13 (Length: 220)
Name: NF3262_low_13
Description: NF3262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3262_low_13 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 32373028 - 32373248
Alignment:
| Q |
1 |
catgtatccattcttctcaatactcctaaccaaa-tgctctaaatccaggactctcagtaatttgtctcaaagattgcaaatacatagctgacaataatt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32373028 |
catgtatccattcttctcaatactcctaaccaaaatgctctaaatccaggactctcagtaatttgtctcaaagattgcaaatacatagctgacaataatt |
32373127 |
T |
|
| Q |
100 |
ccatagcaagtttcaatgtcccttccatacttctcatttccctctcagcattatctcttcttgaatattccaacatcttctcatgtaactcatcaaccat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32373128 |
ccatagcaagtttcaatgtcccttccatacttctcatttccctctcagcattatctcttcttgaatattccaacatcttctcatgtaactcatcaaccat |
32373227 |
T |
|
| Q |
200 |
agcaaatatcacaaggttgaa |
220 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32373228 |
agcaaatatcacaaggttgaa |
32373248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University