View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3262_low_2 (Length: 425)
Name: NF3262_low_2
Description: NF3262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3262_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 415
Target Start/End: Original strand, 30958945 - 30959348
Alignment:
| Q |
13 |
aaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaacta-gggcctttgataat |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30958945 |
aaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaactaagggcctttgataat |
30959044 |
T |
|
| Q |
112 |
tttcaggtagataatgaatattgatttaatacttgttaaatgttgcaaaataattgaaattcatcccctgaattgttgtgaaatctctttagtttgtgaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30959045 |
tttcaggtagataatgaatattgatttaatacttgttaaatgttgcaaaataattgaaattcatcccctgaattgttgtgaaatctctttagtttgtgaa |
30959144 |
T |
|
| Q |
212 |
tttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctcagtataagtataag |
311 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30959145 |
tttcgcggaaatcatgtcaaacaacatttctcttacacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctcagtataagtataag |
30959244 |
T |
|
| Q |
312 |
gccgcagtagcgcttggtctactagggtaagattatgattcattaccttcagtgttattctctattatttttcatattgaatnnnnnnngagtctcaagt |
411 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30959245 |
gccgcagcagcgcttggtctactagggtaagattatgattcattaccttcagtgttattctctattatttttcatattgaataaaaaaagagtctcaagt |
30959344 |
T |
|
| Q |
412 |
tcat |
415 |
Q |
| |
|
|||| |
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|
| T |
30959345 |
tcat |
30959348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 30955107 - 30955172
Alignment:
| Q |
13 |
aaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaaggagttt |
78 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
30955107 |
aaatttcctctttcaatcatattggttggtgttggagatggaccttgggacatggtgaaggagttt |
30955172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 305
Target Start/End: Complemental strand, 11688939 - 11688829
Alignment:
| Q |
195 |
tctctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatccctt |
294 |
Q |
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||||||||||||||||||||| |||| || |||||||| || | ||| |||||||||||| ||||||||||| || | |||||| ||| |||| |||| |
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| T |
11688939 |
tctctttagtttgtgaatttcacggagattatgtcaaagaatacacctccttcacgaaaagaagcagcatttgcacttgcagcattgatggaaattcctt |
11688840 |
T |
|
| Q |
295 |
ctcagtataag |
305 |
Q |
| |
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||||||||||| |
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| T |
11688839 |
ctcagtataag |
11688829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 11689138 - 11689036
Alignment:
| Q |
17 |
ttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaactagggcctttgataattttca |
116 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||| || ||| || ||||||||| || | ||||| |||||||| || |
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|
| T |
11689138 |
ttcctctttcaattatattggttggtgttggagatggaccatgggacatgatgaaagaatttgacgataatattccatctcgtgccttcgataatttcca |
11689039 |
T |
|
| Q |
117 |
ggt |
119 |
Q |
| |
|
||| |
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|
| T |
11689038 |
ggt |
11689036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 7474127 - 7474234
Alignment:
| Q |
13 |
aaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaaggagttttgtgacaatattccaactagggcctttgataatt |
112 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| | |||||||| ||||||| |
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|
| T |
7474127 |
aaatttcctctttcgatcatattggttggtgttggagatggaccttgggacatgatgaaggagtttgatgacaatatgccagccagggccttcgataatt |
7474226 |
T |
|
| Q |
113 |
ttcaggta |
120 |
Q |
| |
|
|||||||| |
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|
| T |
7474227 |
ttcaggta |
7474234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 7474336 - 7474443
Alignment:
| Q |
198 |
ctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctc |
297 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| || |||||| ||| ||||||||||||||||||||||||||||| |||||| ||| |||| ||||||| |
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| T |
7474336 |
ctttagtttgtgaatttcacggaacttatgtcgaagaacattcctccttcacgaaaagaggcagcatttgctctcgcagcattgatggaaattccttctc |
7474435 |
T |
|
| Q |
298 |
agtataag |
305 |
Q |
| |
|
|||||||| |
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|
| T |
7474436 |
agtataag |
7474443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 44131152 - 44131205
Alignment:
| Q |
18 |
tcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaa |
71 |
Q |
| |
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|||||| ||||| || |||||||| |||||||||||||| |||||| ||||||| |
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|
| T |
44131152 |
tcctctctcaattattttggttggagttggagatggaccatgggacgagatgaa |
44131205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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