View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3262_low_4 (Length: 278)
Name: NF3262_low_4
Description: NF3262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3262_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 19343210 - 19343473
Alignment:
| Q |
15 |
cagagaacctccaaggaaagatgaacctattaagctaccagattctgttcagaactctccagtttcagatgtgattttctcttannnnnnnactactttg |
114 |
Q |
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| T |
19343210 |
cagagaacctccaaggaaagatgaacctattaagctaccagattctgttcagaactctccagtttcagatgtaattttctcttatttttcaccatttttg |
19343309 |
T |
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| Q |
115 |
tttcttcattgtatatgtatagttttgttgtaacttgtcacctaagaattgttatgacttacatgtgtgtgatgtagttgctgaaaaaataccaggatcc |
214 |
Q |
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| T |
19343310 |
tttcttcattgtatacgtatagttttgttgtaacttgtcacctaagaattgttatgactaacatgtgtgtgatgtagttgctgaagaaataccaggatcc |
19343409 |
T |
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| Q |
215 |
aagtaaaaggcctcaaagggatttaggcttagctataaagccgtttactggaattatgatttct |
278 |
Q |
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| T |
19343410 |
aagtaaaaggcctcaaagggatttaggcttagctataaagccttttactggaatgatgatttct |
19343473 |
T |
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