View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3262_low_5 (Length: 251)
Name: NF3262_low_5
Description: NF3262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3262_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 15526848 - 15526613
Alignment:
| Q |
12 |
tgatttgattattgataattgttcggtgaagggtgcaaatatcttgtgcatgttaagccagacactagttagcttaacgattcgtaatcattcattccat |
111 |
Q |
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| T |
15526848 |
tgatttgatcattgataattgttcggtgaagggtgcaaatatcttgtgcatgttaagccagacactagttagcttaacgatacgtaatcattcattccac |
15526749 |
T |
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| Q |
112 |
aattacaaaatcgagctatctgctccaagcctttgtacatttgcttttacgggtactccttatcagacacttcttggaaccaatctttcttctgtcaaaa |
211 |
Q |
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| T |
15526748 |
aattaccaaatcgagctatctgctccaagccttcgtacatttgcttttacgggtactccttatcagacacttcttggaaccaatctttcttctgtcaaaa |
15526649 |
T |
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| Q |
212 |
aagtaattattgacgcggaaatgatggcaaattact |
247 |
Q |
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| T |
15526648 |
aagtaattattgacgcggaaatgttggcaaattact |
15526613 |
T |
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Back To:
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 42602346 - 42602310
Alignment:
| Q |
117 |
caaaatcgagctatctgctccaagcctttgtacattt |
153 |
Q |
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| T |
42602346 |
caaaatcgagttatctgctccaagcctttgtgcattt |
42602310 |
T |
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