View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3263_high_2 (Length: 523)
Name: NF3263_high_2
Description: NF3263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3263_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 9 - 501
Target Start/End: Original strand, 43602786 - 43603289
Alignment:
| Q |
9 |
acatcatcacctttgcagcaggatccttatgatcctttcacttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagat |
108 |
Q |
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| T |
43602786 |
acatcatcacctttgcagcaggatccttatgatcctttcacttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagat |
43602885 |
T |
|
| Q |
109 |
ctttctctgttcggtttgccgatccttgtaaatttattaattatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagc |
208 |
Q |
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| T |
43602886 |
ctttctctgttcggtttgccgatccttgtaaatttattaattatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagc |
43602985 |
T |
|
| Q |
209 |
aatgtttgcatctctttttcttcatattacttagcctatagtctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatt |
308 |
Q |
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| T |
43602986 |
aatgtttgcatctctttttcttcatattacttagcctatagtctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatt |
43603085 |
T |
|
| Q |
309 |
tgtaatataagtgagaccattgcacggtggagttcaattttattgatggagaagttatgacttatggggaaattatttttcacaagggttgtaaagtttt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
43603086 |
tgtaatataagtgagaccattgcacggtggagttcaattttattgatggagaagttatgacttatggggaaattatttttcataagggtagtaaagtttt |
43603185 |
T |
|
| Q |
409 |
taatttgtgcatggggtg-------taagagttaagaagtgaagtgatgagaggttaaatgtttgatctccattct----caccataaaaactaacaata |
497 |
Q |
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| T |
43603186 |
taatttgtgcatggggtgtaagagttaagagttaagaagtgaagtgatgagaggttaaatgtttgatctccattctcacccaccataaaaactaacaata |
43603285 |
T |
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| Q |
498 |
ttaa |
501 |
Q |
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| T |
43603286 |
ttaa |
43603289 |
T |
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