View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3263_high_3 (Length: 482)
Name: NF3263_high_3
Description: NF3263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3263_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 43396385 - 43395919
Alignment:
| Q |
1 |
atcaaagatcgcaacgtaaccacccccctaattttaattcactattatctcccctcacctcctctcaaccaaaaacaaagcattgaaatataaatctctc |
100 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
43396385 |
atcaaagatcgcaacgcaaccacacccctaattttaattcactattatctcccctagcctactctcaaccaaaaacaaagcattgaaata--aatctctc |
43396288 |
T |
|
| Q |
101 |
ccctctccttcaattataatctcagctataccaagatattttactcttt-----ggcagttcaaaaataacagtatctcactgtgnnnnnnngttctgtg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |
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| T |
43396287 |
ccctctccttcaattataatctcagctataccaagatattttactctttaatttggcagttcaaaaataacagtatctcactgagtttttttgttctgtg |
43396188 |
T |
|
| Q |
196 |
gtgtccaaattatctgcttatagtttatatagtatgcctaactttttctttaaatttataagcaaactgataagagataaagaggaattaaagatggtgt |
295 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43396187 |
gtgtccaaattatctgcttatagtttatatagtatgcctaactttttctttaaatttataagcaaactgataagagataaagaggaaataaagatggtgt |
43396088 |
T |
|
| Q |
296 |
gctcagggagagaagagttatgttattacataaaacagacagaattggaagacgtaaaaaacttgcattagtaaatacgaaagttttagtctgtcaaatc |
395 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396087 |
gctcagggagggaagagtaatgttattacataaaacagacagaattggaagacgtaaaaaacttgcattagtaaatacgaaagttttagtctgtcaaatc |
43395988 |
T |
|
| Q |
396 |
acttctgcgtctcagaatctcaacgcctaagtaatcaaccggacctagaatcggcacatgaggctttcc |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43395987 |
acttctgcgtctcagaatctcaacgcctaagtaatcaaccggacctagaatcggcacatgaggctttcc |
43395919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 334 - 464
Target Start/End: Complemental strand, 43400190 - 43400060
Alignment:
| Q |
334 |
acagaattggaagacgtaaaaaacttgcattagtaaatacgaaagttttagtctgtcaaatcacttctgcgtctcagaatctcaacgcctaagtaatcaa |
433 |
Q |
| |
|
|||||| ||||| || |||||||| |||| || |||||| ||||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
43400190 |
acagaactggaatacataaaaaacctgcagtactaaatatgaaagttctagtctgccaaatcgcttctgcgtctcagaatctcaacgcccaagtaatcaa |
43400091 |
T |
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| Q |
434 |
ccggacctagaatcggcacatgaggctttcc |
464 |
Q |
| |
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||||||| |||| | ||||||||||||||| |
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| T |
43400090 |
ccggaccctgaatagccacatgaggctttcc |
43400060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 434
Target Start/End: Complemental strand, 43392603 - 43392511
Alignment:
| Q |
340 |
ttggaagacgtaaaaaacttgcattagtaaa-tacgaaagttttagtctgtcaaatcacttctgcgtctcagaatctcaacgcctaagtaatcaac |
434 |
Q |
| |
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||||||||| | |||| |||||| ||||||| || ||||||| |||||| ||||||| ||| |||| |||| | |||||||||||||||||||| |
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| T |
43392603 |
ttggaagacattaaaaccttgcaatagtaaaatatgaaagttctagtctttcaaatcgcttatgcgcctca---tttcaacgcctaagtaatcaac |
43392511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 364 - 464
Target Start/End: Original strand, 37410369 - 37410469
Alignment:
| Q |
364 |
tagtaaatacgaaagttttagtctgtcaaatcacttctgcgtctcagaatctcaacgcctaagtaatcaaccggacctagaatcggcacatgaggctttc |
463 |
Q |
| |
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||||||||| ||||||| || | ||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||| |
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| T |
37410369 |
tagtaaatatgaaagttctactttgtcaaatcgcttctgcgtctcagaatctcaacacctaagtaatcaaccggaccctgaatcgccacatgaggctttc |
37410468 |
T |
|
| Q |
464 |
c |
464 |
Q |
| |
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| |
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|
| T |
37410469 |
c |
37410469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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