View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3263_high_5 (Length: 334)
Name: NF3263_high_5
Description: NF3263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3263_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 45304262 - 45303971
Alignment:
| Q |
20 |
aaagtaactaggtataggggaaagtaagaaaggaccatagtatagtaggtaagaaaagaaaagaaaaggtttcgttgtagtagtaatttgttgggaaatg |
119 |
Q |
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| T |
45304262 |
aaagtaactaggtataggggaaagtaagaaaggaccatagta-----ggtaagaaaagaaaag-----gtttcgttgtagtagtaatttgttgggaaatg |
45304173 |
T |
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| Q |
120 |
aaaagggtcctaaaagctgcattacttcctttctgtcggggctgctgttatgaaacttagctgggcttttggggcttgtgcatattcattcaagtcaagt |
219 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45304172 |
aaaagggtcctaaaagctgcattccttcctttctgtcggggctgctgttatgaaacttagctgggcttttggggcttgtgcatattcattcaagtcaagt |
45304073 |
T |
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| Q |
220 |
cagtagcttttgggcactcccccattccattattcttctttctatgaaatgaaatgaaattgagagaccaccaaaacaaacaagacaaccctcaccttca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |
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| T |
45304072 |
cagtagcttttgggcactcccccattccattattcttctttctatgaaatgaaat-----ttagagaccaccaaaacaa----gacaaccctcaccttca |
45303982 |
T |
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