View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3263_high_9 (Length: 239)
Name: NF3263_high_9
Description: NF3263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3263_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 45828218 - 45828439
Alignment:
| Q |
1 |
ttcatcttttaatcgaagataagagaagattctgaactctggtacataaagacagcttgtcagatacatgcacaacagttgcaacactttgcttcgtgaa |
100 |
Q |
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| T |
45828218 |
ttcatcttttaatcgaagataagagaagattctgaactctggtacataaagacagcttgtcagatacatgcacaacagttgcaacactttgcttcgtgaa |
45828317 |
T |
|
| Q |
101 |
ctttgcctatttataagaagcgaaaaatatattgtaataatcccaaaaaattaaaatgtactccatcgggttataaatattccctctgatccttattact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||| |
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| T |
45828318 |
ctttgcctatttataagaagcgaaaaatatattgtaataatcccaaaaaattaaaatgtactctctctggttataaatatttcctccgatccttattact |
45828417 |
T |
|
| Q |
201 |
ccctccgattttatttataaaa |
222 |
Q |
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|||| ||||| ||||||||||| |
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| T |
45828418 |
cccttcgattctatttataaaa |
45828439 |
T |
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