View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3263_low_1 (Length: 745)
Name: NF3263_low_1
Description: NF3263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3263_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 595; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 11 - 733
Target Start/End: Original strand, 3740403 - 3741125
Alignment:
| Q |
11 |
cagagagaataactctaagttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttacta |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3740403 |
cagagagaataactctaagttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtagaatttacta |
3740502 |
T |
|
| Q |
111 |
gtcgaggaaatcatgatttctaaatctaaatattggtctatnnnnnnnntgttagcaacactatgtttgtgtctatatgtatatattagaactaatatag |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3740503 |
gtcgaggaaatcatgatttctaaatctaaatattggtctataaaaaaaatgttagcaacactatgtttgtgtctatatgtatatattagaactaatatag |
3740602 |
T |
|
| Q |
211 |
gtagacatgacaaaacaggttgaatatttttaaaatgatatgtcgatatggtctctctaagagccaactgcgaaaagtgtattgagctgaaaatcaannn |
310 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3740603 |
gtagacatgacaaaacaagttgaatatttttaaaatgatatgtcgatatagtctctctaagagccaactgtgaaaagtgtattgagctgaaaatcaattt |
3740702 |
T |
|
| Q |
311 |
nnnnatttatattatcaatttgttttaacctgtccatatagtctctttaggagccaac---atttgacaaagtttatggggctggaaatcaaacttttaa |
407 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3740703 |
ttttatttatattatcaatttgttttaatctgtccatatagtctctctaggagccaacaacatttgacaaagtttatggggctggaaatcaaacttttaa |
3740802 |
T |
|
| Q |
408 |
tttattattatcaatttcttttaatttgtacatatagtctatctaggaggtaaaacatgacaaaacttattgaacaagaaatcaaataatttgaaggtta |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3740803 |
tttattattatcaatttcttttaatttgtacatatagtctatctaggaggtaaaccatgacaaaacttattgaacaagaaatcaaataatttgaaggtta |
3740902 |
T |
|
| Q |
508 |
tatgtaagggtgataatagaccagatcggcagttgtctgcgacctatcatacgacatgtctagcctagggaaactctatcattgtgacttcttcccacaa |
607 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
3740903 |
tatgtaagggtgataatagaccaaatcgacagttgtttgcgacctatcatacgacatgtctagcctagggaaagtctatcattgtgacttcttcccacaa |
3741002 |
T |
|
| Q |
608 |
cctcaatatcaagggagtctgctcacaaaagttcattgtaataagaaagcaagaagtaaagaaacaaaactgt-ttgaaactgcaaataagacacaagag |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3741003 |
cctcaatatcaagggagtctgctcacaaaagttcattgtaataaaaaagcaagaagtaaagaaacaaaactgtattgaaactgcaaataagacacaagag |
3741102 |
T |
|
| Q |
707 |
tttctatatatgtgtaatggatgatga |
733 |
Q |
| |
|
|||| ||||||||||||||||||| |
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|
| T |
3741103 |
tttc----tatgtgtaatggatgatga |
3741125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 3729290 - 3729420
Alignment:
| Q |
11 |
cagagagaataactctaagttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttacta |
110 |
Q |
| |
|
||||| |||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||| ||||||||| |
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|
| T |
3729290 |
cagagtgaataagtctaagttgcttaaatagtttgtacctgatgtagaaataagaagaacgacgagacagatgaacatgaagacagtgcataatttacta |
3729389 |
T |
|
| Q |
111 |
gtcgaggaaatcatgatttctaaatctaaata |
142 |
Q |
| |
|
|| |||||||||||||||||| |||||||||| |
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|
| T |
3729390 |
gttgaggaaatcatgatttct-aatctaaata |
3729420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 338 - 573
Target Start/End: Original strand, 3737264 - 3737503
Alignment:
| Q |
338 |
acctgtccatatagtctctttaggagccaacatttgacaaagtttatggggctggaaatcaaacttttaatttattattatcaatttcttttaatttgta |
437 |
Q |
| |
|
||||| ||||||||||||| |||||||||| || |||||| | |||| || || |||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
3737264 |
acctgcccatatagtctctctaggagccaagatgtgacaacgcttattggtctaaaaatcaaaattttaatttattattatcaattt-ttttaatttgtg |
3737362 |
T |
|
| Q |
438 |
catatagtctatctaggaggtaaaacatgaca-aaacttattgaacaagaaatcaaataatttgaaggttatatgtaagggtgataatagaccag----a |
532 |
Q |
| |
|
| ||||| | | ||||| ||||| |||||| || ||||| ||||||||||||||| |||||||||| ||||||||||||| |||||||||| | |
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| T |
3737363 |
ccaatagtttctttaggatctaaaagatgacagaagtttatttgacaagaaatcaaatagtttgaaggttgtatgtaagggtgagaatagaccagaccaa |
3737462 |
T |
|
| Q |
533 |
tcggcagttgtctgcgacctatcatacgacatgtctagcct |
573 |
Q |
| |
|
|| || |||||||| ||||||||||||||||||||||| |
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|
| T |
3737463 |
ccgacatgagtctgcgatctatcatacgacatgtctagcct |
3737503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 344 - 530
Target Start/End: Original strand, 3729507 - 3729693
Alignment:
| Q |
344 |
ccatatagtctctttaggagccaacatttgacaaagtttatggggctggaaatcaaacttttaatttattattatcaatttcttttaatttgtacatata |
443 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||| ||||||||| |||| |||||||| |||||||||| ||||| |||||| ||||||||||| |||||| |
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|
| T |
3729507 |
ccatatagtctcttcagaagccaacatgtgacagagtttatggagctgaaaatcaaaattttaatttactattagcaatttgttttaatttgtccatata |
3729606 |
T |
|
| Q |
444 |
gtctatctaggaggtaaaacatgacaaaacttattgaacaagaaatcaaataatttgaaggttatatgtaagggtgataatagacca |
530 |
Q |
| |
|
| | ||||| | |||||||||||||| ||||||||| |||||||||||||| ||||| | | |||| ||||| ||||||||| |
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| T |
3729607 |
ggttgtctagaaactaaaacatgacaaagtttattgaaccgtaaatcaaataatttaaaggtgacacgtaaaggtgagaatagacca |
3729693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 28 - 277
Target Start/End: Original strand, 3737047 - 3737293
Alignment:
| Q |
28 |
agttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttactagtcgaggaaatcatgat |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||| || || |||| ||||||| ||| ||||| |||| || ||||||||||| |
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|
| T |
3737047 |
agttgcttagttagtttgtacctgatgcagaaattaggagaacggaaaggcatataaacaagaagacaatgtataatttgctagcagaagaaatcatgat |
3737146 |
T |
|
| Q |
128 |
ttctaaatctaaatattggtctatnnnnnnnntgttagcaacactatgtttgtgtctatatgtatatattagaactaatataggtagacatgacaaaaca |
227 |
Q |
| |
|
||||||||| ||||| || ||||| || | |||||| ||||||||||||||||||||||||| ||| | |||| ||||| |||||||||| |
|
|
| T |
3737147 |
ttctaaatccaaataatgttctataaagaa---gtgaccaacacaatgtttgtgtctatatgtatatattgaaaccagtataagtagatatgacaaaact |
3737243 |
T |
|
| Q |
228 |
ggttgaatatttttaaaatgatatgtcgatatggtctctctaagagccaa |
277 |
Q |
| |
|
||| || |||||| |||||| || | |||| ||||||||| ||||||| |
|
|
| T |
3737244 |
agtttaacatttttgaaatgacctgcccatatagtctctctaggagccaa |
3737293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 3729435 - 3729519
Alignment:
| Q |
182 |
tctatatgtatatattagaactaatataggtagacatgacaaaacaggttgaatatttttaaaatgatatgtcgatatggtctct |
266 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| ||| ||||| |||| | |||| |||||| |
|
|
| T |
3729435 |
tctatatgtatatattggaacttatataggtagacatgacaaaacaagttgaatatatttgaaatggtatgcccatatagtctct |
3729519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 323 - 430
Target Start/End: Original strand, 3755215 - 3755322
Alignment:
| Q |
323 |
tatcaatttgttttaacctgtccatatagtctctttaggagccaacatttgacaaagtttatggggctggaaatcaaacttttaatttattattatcaat |
422 |
Q |
| |
|
||||||| | |||||| |||||||||||||| |||||||||||| | ||||||||||||| |||| | ||||| || ||| ||||||||||||||||| |
|
|
| T |
3755215 |
tatcaatatattttaatttgtccatatagtctatttaggagccaagacatgacaaagtttattgggccgaaaatctaaatttcaatttattattatcaat |
3755314 |
T |
|
| Q |
423 |
ttctttta |
430 |
Q |
| |
|
|| ||||| |
|
|
| T |
3755315 |
ttgtttta |
3755322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 471
Target Start/End: Original strand, 3755207 - 3755270
Alignment:
| Q |
408 |
tttattattatcaatttcttttaatttgtacatatagtctatctaggaggtaaaacatgacaaa |
471 |
Q |
| |
|
||||||| ||||||| | ||||||||||| |||||||||||| |||||| || |||||||||| |
|
|
| T |
3755207 |
tttattactatcaatatattttaatttgtccatatagtctatttaggagccaagacatgacaaa |
3755270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 38483029 - 38482946
Alignment:
| Q |
58 |
aaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttactagtcgaggaaatcatgatttctaaatctaaat |
141 |
Q |
| |
|
||||||||| || ||||||||| | |||||||||||| | || |||||||||| | | ||| ||||||||||||||| ||||| |
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| T |
38483029 |
aaataaggaaaatgacaagacagaggaacatgaagacggggtagaatttactaataaaagaagtcatgatttctaaatgtaaat |
38482946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 646
Target Start/End: Original strand, 26269841 - 26269906
Alignment:
| Q |
582 |
tctatcattgtgacttcttc-ccacaacctcaatatcaagggagtctgctcacaaaagttcattgt |
646 |
Q |
| |
|
|||||||||||||||| || |||||| ||||| ||||||||||||| ||||||| | |||||||| |
|
|
| T |
26269841 |
tctatcattgtgacttattttccacaatctcaagatcaagggagtctactcacaagaattcattgt |
26269906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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