View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3263_low_12 (Length: 237)
Name: NF3263_low_12
Description: NF3263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3263_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44690930 - 44690710
Alignment:
| Q |
1 |
agccatccgggcccggacttttattaccatcactttccttcaccaccctcaccaactcctcttccaaaaacggcgcaattaaacttgcattttcctccac |
100 |
Q |
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| T |
44690930 |
agccatccgagcccgaacttttattaccatcactttccttcaccaccctcaccaactcctcttccaaaaacggcgcaattaaacttgcattttcctccac |
44690831 |
T |
|
| Q |
101 |
gatcatattattgattaactccctctttcattatttgtgtcaaattaattgttcacccattttcaatgcaatatatctaataaatataattttgttattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44690830 |
gatcatattattgattaactccctctttcattatttgtgtcaaattaattgttcacccattttcaatgcaatatatctaataaatataattttgttattg |
44690731 |
T |
|
| Q |
201 |
ctatattagctacgaagattc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
44690730 |
ctatattagctacgaagattc |
44690710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 16078238 - 16078195
Alignment:
| Q |
4 |
catccgggcccggacttttattaccatcactttccttcaccacc |
47 |
Q |
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| T |
16078238 |
catccggacccggactcttattaccatcactctccttcaccacc |
16078195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 44682241 - 44682201
Alignment:
| Q |
7 |
ccgggcccggacttttattaccatcactttccttcaccacc |
47 |
Q |
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| T |
44682241 |
ccgggtccgggcttttattaccatcactttccttaaccacc |
44682201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 17776461 - 17776417
Alignment:
| Q |
3 |
ccatccgggcccggacttttattaccatcactttccttcaccacc |
47 |
Q |
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|||||||| |||||||| ||||| |||||||| |||||||||||| |
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| T |
17776461 |
ccatccggacccggactcttattcccatcactctccttcaccacc |
17776417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 43458086 - 43458042
Alignment:
| Q |
3 |
ccatccgggcccggacttttattaccatcactttccttcaccacc |
47 |
Q |
| |
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|||||| ||||||||| |||||||||||||| |||||||||||| |
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| T |
43458086 |
ccatccaggcccggacgcttattaccatcactctccttcaccacc |
43458042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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