View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3263_low_15 (Length: 231)
Name: NF3263_low_15
Description: NF3263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3263_low_15 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 44690947 - 44691177
Alignment:
| Q |
1 |
taaagaattttggcatttgatcaaggatgaggttaggataatgttcgatcaattctatgttaatgaggtggttcctagaggtcgtttggcgtatttcgtt |
100 |
Q |
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| T |
44690947 |
taaagaattttggtatttgatcaaggatgaggttaggataatgttcgatcaattctatgctaatgaggtggttcctagaggtcttttggcgtatttcgtt |
44691046 |
T |
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| Q |
101 |
gctttgatttcaaaggtttcctcgccaatggggttaaaggattaccgtccaatttccttgctcggtagtctttataaattcctatctaaggtattggcaa |
200 |
Q |
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| T |
44691047 |
gctttgatttcaaaggtttcctcgccaatggggttaaaggattaccgtccaatttccttgctcggtagtctttataaattcctatctaaggtattggcaa |
44691146 |
T |
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| Q |
201 |
agaggttggccggtgttatgaactcaattat |
231 |
Q |
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| T |
44691147 |
agaggttggccggtgttatgaactcgattat |
44691177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 231
Target Start/End: Original strand, 29299620 - 29299828
Alignment:
| Q |
23 |
aaggatgaggttaggataatgttcgatcaattctatgttaatgaggtggttcctagaggtcgtttggcgtatttcgttgctttgatttcaaaggtttcct |
122 |
Q |
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| T |
29299620 |
aaggatgaggtgaggattatgtttgatcaattacatgctaatgaggtggtgccaagaagtttattagcttattttgtcgctttgatcccaaaggtgtcct |
29299719 |
T |
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| Q |
123 |
cgccaatggggttaaaggattaccgtccaatttccttgctcggtagtctttataaattcctatctaaggtattggcaaagaggttggccggtgttatgaa |
222 |
Q |
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| T |
29299720 |
caccgatgatgttgaaggactttcgtccaatttctctacttggtagtatttacaagttactctctaaggtgttggcaaaaagattagccggtgtaatgaa |
29299819 |
T |
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| Q |
223 |
ctcaattat |
231 |
Q |
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| T |
29299820 |
ttcaattat |
29299828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 49454644 - 49454712
Alignment:
| Q |
1 |
taaagaattttggcatttgatcaaggatgaggttaggataatgttcgatcaattctatgttaatgaggt |
69 |
Q |
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| T |
49454644 |
taaagaattttggtacttgataaaagatgaggttagaatcatgttcgatcaattttatgctaatgaggt |
49454712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 231
Target Start/End: Original strand, 13852336 - 13852481
Alignment:
| Q |
86 |
ttggcgtatttcgttgctttgatttcaaaggtttcctcgccaatggggttaaaggattaccgtccaatttccttgctcggtagtctttataaattcctat |
185 |
Q |
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| T |
13852336 |
ttggcgtattttgttgctttaattccaaaagtgtcttcacctttggagttgaaggattatcgaccaatctcactgctagggtgtctgtataaattattag |
13852435 |
T |
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| Q |
186 |
ctaaggtattggcaaagaggttggccggtgttatgaactcaattat |
231 |
Q |
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| T |
13852436 |
caaaggtgttggcaaggaggttggcaggagttatgaactcaattat |
13852481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 8506597 - 8506535
Alignment:
| Q |
5 |
gaattttggcatttgatcaaggatgaggttaggataatgttcgatcaattctatgttaatgag |
67 |
Q |
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| T |
8506597 |
gaattttggtacttgatcaaggatgaggtgagaattatgttcgaccaattccatgctaatgag |
8506535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 47551332 - 47551284
Alignment:
| Q |
7 |
attttggcatttgatcaaggatgaggttaggataatgttcgatcaattc |
55 |
Q |
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| T |
47551332 |
attttggtatttgatgaaggatgaggtgagaattatgttcgatcaattc |
47551284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 40388144 - 40388092
Alignment:
| Q |
2 |
aaagaattttggcatttgatcaaggatgaggttaggataatgttcgatcaatt |
54 |
Q |
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| T |
40388144 |
aaagaattttggtacttgataaaagatgaggttagaattatgttcgatcaatt |
40388092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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