View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3263_low_16 (Length: 226)
Name: NF3263_low_16
Description: NF3263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3263_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 9071961 - 9072178
Alignment:
| Q |
4 |
tcgaaacaaacaagtatcttactagtaaataagaaaaggatacaaaagaatcaagaatggaacatcctcctgattctacaagccatggaagatttggacc |
103 |
Q |
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| T |
9071961 |
tcgaaacaaacaagtatcttactagtaaataagaaaaggatacaaaagaatcaagaatggaacatcctcctgattctacaagccatggaagatttggacc |
9072060 |
T |
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| Q |
104 |
aagttttgaccaatccatgctgcttacaagtatgctacatgaaacaaaaattcatgtcttgttgaatatgttgattgacatagaagtcacatattgagac |
203 |
Q |
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| T |
9072061 |
aagttttgaccaatccatgctgcttacaagtatgctacatgaaacaaaaattcatgtcttgttgaatatgttgattgacatagaagtcacatattgagac |
9072160 |
T |
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| Q |
204 |
ttaaaagatgatataact |
221 |
Q |
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|||||||||||||||||| |
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| T |
9072161 |
ttaaaagatgatataact |
9072178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 34337619 - 34337725
Alignment:
| Q |
37 |
aaaaggatacaaaagaatcaagaatggaacatcctcctgattctacaagccatggaagatttggaccaagttttgaccaatccatgctgcttacaagtat |
136 |
Q |
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| T |
34337619 |
aaaaggatacgaaaaaatcaaggaggacacatcctccagcatctaccagccatggtagatttggtccgattgttgaccaatccaagctgcgcacaagtat |
34337718 |
T |
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| Q |
137 |
gctacat |
143 |
Q |
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| T |
34337719 |
gctacat |
34337725 |
T |
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