View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3263_low_4 (Length: 401)
Name: NF3263_low_4
Description: NF3263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3263_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 43396343 - 43396732
Alignment:
| Q |
1 |
agtgaattaaaattaggggtgtggttacgttgcgatctttgatattgcagacaaatgcagttgatgcagatgcaatgtagctgcggagaccactaaagtc |
100 |
Q |
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| T |
43396343 |
agtgaattaaaattaggggtgtggttgcgttgcgatctttgatattgcagacaaatgcagttgatgcagatgcaatgtagctgcggagaccactaaagtc |
43396442 |
T |
|
| Q |
101 |
attatgttgtggtcgtgcatataattgttgacatcacacgggaaggagcaagatcttccaattccatctcaccaataaaattattaaaaagatacatctc |
200 |
Q |
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| T |
43396443 |
attatgttgtggtcgtgcatatagttgttgacatcacacgggaaggagcgagatcttccaattccatctcaccaataaaattattaaaaagatacatctc |
43396542 |
T |
|
| Q |
201 |
caataattgaccacttgaagtttcttcattaattccccttctttcatctctccggcacaccacattaaaatctccaagaatacaccactccccttcacct |
300 |
Q |
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| T |
43396543 |
caataattgaccacttgaagtttcttcattaattccccttctttcatctctccggcacaccacattaaaatctccaagaatacaccacgccccttcacct |
43396642 |
T |
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| Q |
301 |
ctattagcacgctcctccactaacgcctcccacatcctcctcttagccaccaaatcacatttagaataaacattaaccacaatacatctct |
391 |
Q |
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| T |
43396643 |
ctattagcacgctcctccactaacgcctcccacatcct-ctcttagccaccaaatcacatttagaataaacattaaccacaatacatctct |
43396732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 389
Target Start/End: Original strand, 8507639 - 8507701
Alignment:
| Q |
327 |
ctcccacatcctcctcttagccaccaaatcacatttagaataaacattaaccacaatacatct |
389 |
Q |
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|||||||| |||||| ||||||||||||||||| |||||||| ||||| | |||||||||||| |
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| T |
8507639 |
ctcccacaacctccttttagccaccaaatcacacttagaatacacattgatcacaatacatct |
8507701 |
T |
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