View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3264_low_1 (Length: 372)
Name: NF3264_low_1
Description: NF3264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3264_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 12 - 353
Target Start/End: Original strand, 9935172 - 9935513
Alignment:
| Q |
12 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcaga |
111 |
Q |
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| T |
9935172 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcaga |
9935271 |
T |
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| Q |
112 |
agctgaaatttcctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgt |
211 |
Q |
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| T |
9935272 |
agctgaaatttcctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgt |
9935371 |
T |
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| Q |
212 |
tactactggtgttggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggttaacttccggtggacttggtgctatgggt |
311 |
Q |
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| T |
9935372 |
tactactggtgttggacaacatcaaatgtgggctgctcaattctacaaatacaagagacctaggcagtggttaacttctggtggacttggtgcaatgggt |
9935471 |
T |
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| Q |
312 |
ttcggattacctgctgcaattggtgccgcaattgctaaccct |
353 |
Q |
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| T |
9935472 |
ttcggattacctgctgcaattggtgccgcaattgctaaccct |
9935513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 3472799 - 3472912
Alignment:
| Q |
215 |
tactggtgttggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggttaacttccggtggacttggtgctatgggtttc |
314 |
Q |
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| T |
3472799 |
tactggtgttggacaacatcagatgtgggctgctcagttttataggtacaagagaccaaggcagtggttgacatctgctggtcttggcgctatgggattt |
3472898 |
T |
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| Q |
315 |
ggattacctgctgc |
328 |
Q |
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| T |
3472899 |
ggattgccggctgc |
3472912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 353
Target Start/End: Original strand, 45477118 - 45477459
Alignment:
| Q |
12 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcaga |
111 |
Q |
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| T |
45477118 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaagcttgattttgaggcatggaggcaggagttgaatgtgcaga |
45477217 |
T |
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| Q |
112 |
agctgaaatttcctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgt |
211 |
Q |
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|| | ||||||||||||| |||||||| ||||||| |||| ||||||||||| ||||| ||| || ||||||| ||||| || |||||||| |||||||| |
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| T |
45477218 |
agttaaaatttcctcttggttttaagacatttgaggatgctatttcgcctcagtatgctattcaggtgcttgatgagttgacgaatggtgacgctattgt |
45477317 |
T |
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| Q |
212 |
tactactggtgttggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggttaacttccggtggacttggtgctatgggt |
311 |
Q |
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|| ||||||||||||||| |||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
45477318 |
tagtactggtgttggacagcatcaaatgtggtctgctcagttttacaagtataagagacctaggcagtggttaacttctggtggacttggtgccatgggt |
45477417 |
T |
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| Q |
312 |
ttcggattacctgctgcaattggtgccgcaattgctaaccct |
353 |
Q |
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|| |||||||||||||| || ||||| || ||||||||||| |
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| T |
45477418 |
tttggattacctgctgctatcggtgctgctgttgctaaccct |
45477459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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